DreINT0000084 @ danRer10
Intron Retention
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21293530-21294061:-
Coord C1 exon
chr15:21294010-21294061
Coord A exon
chr15:21293614-21294009
Coord C2 exon
chr15:21293530-21293613
Length
396 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
3' ss Seq
TCTGTCTCTCTAATTCACAGGTG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GCTGAAGGAACTGAAAAGACAGAGACCAACAGCTGGTTACTGTGTCCAAAGG
Seq A exon
GTGGGTCTACAGGTTGTGTAGATACAGTGCATCCGGACAGAATTCACTGTGCTTCACTTTGTGCTTATTCCATAATAATAAAAAAAAAAAATTATTTCTAAAAAATCAACAAAAATACCTTATATCGATAACGAGAAAAAAAAACTTTTGTTTAAACATTCATAATTGAGTTTAGGTATTATACAAGTGCATTCTGCTTCCACTGATATTTTTTTTCTGAGATGTTTTTGCAACTTGATTTTAGACACTATTTTACACTTTTGTGTGTTTAAATCAAGATAATTACTAATTGTAATTGTGTTTTTATTGTTAATGATACTTAAGAGATGGTATTAGAATATTTATTTTGAAGTGTTCTCCTGATGACTGATGTGTATCTGTCTCTCTAATTCACAG
Seq C2 exon
GTGACAGTCTCTCAGAGGAAATGAACCTGACTCTTCCTAAAGATGTGATAGAGGGATCAGCAAAATCCTCAGTTTCAGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685:ENSDART00000155787:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]