DreINT0000463 @ danRer10
Intron Retention
Gene
ENSDARG00000063407 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr16:1289579-1290079:+
Coord C1 exon
chr16:1289579-1289758
Coord A exon
chr16:1289759-1290068
Coord C2 exon
chr16:1290069-1290079
Length
310 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GTCTGTGTGTGTGTTCTCTGTGT
3' ss Score
1.25
Exon sequences
Seq C1 exon
TGTTCTGCGGAGTGCGGGCCGGGTGTGCAGCGCAGGGAGGTGGTGTGTGTGAGCGCTGGAGGCCGGAGAGAAGGAGACGGAGGACTGGAGTGTGTCGGAGACAAACCTGCGGACATGAAGGCCTGTAACGGAGGCCCCTGTACAGCCACATACCTGTGGTACACCGGGCCCTGGGGACAC
Seq A exon
GTGAGTCTACTGCACACACAACTATAAGTAAGGGATAAAGTACATCCAGCCGGTGCTTCTTGCAGAATCAACCATTCAGCCTTACACAACAGCTGCTGATAAAGCTGTTGGGCTTATTCTGTGAGGAATAGAAATAGAGAGTAGATAAAAATGTAACATAATTGAATATAGACAACAATGTCATTTGAGGATAAAGTTGCAATGAGTGATGAAGAGCTGATAAGCTATTACCGCACAATGCAGAACAGAAATACATAATAGTTCAGAATAAGTGAAGCAGACTTGTTTTGGTCTGTGTGTGTGTTCTCTG
Seq C2 exon
TGTTGTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063407:ENSDART00000092627:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.6=76.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]