DreINT0002215 @ danRer10
Intron Retention
Gene
ENSDARG00000103222 | BX005085.5
Description
NA
Coordinates
chr3:7284679-7285672:-
Coord C1 exon
chr3:7285488-7285672
Coord A exon
chr3:7284822-7285487
Coord C2 exon
chr3:7284679-7284821
Length
666 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
ATTTGTCCCTCCTCCTCCAGTGA
3' ss Score
9.54
Exon sequences
Seq C1 exon
GCAGCCAATCGGCTTTCTCAGAACTAGCTACAGGCAGCCAATCGGCTTTCGCTGATCAACTTGCAGGCAAATATCCCGCCCACGCGCTTATTCTGAGGCGGAGATCGGAGAGAGCAGAACTTTGCTGTTTGAGGATTAATAGGATTAAATCCTCTTCTGTTGCGGGTGTTGTTCGTCTGTTCAGA
Seq A exon
GTAAGTGTATGATATCTGACCATAGTAGCGTTCGCAGACTTGCGGGAATTATCTTGCGGTGTGAACCGCTTTAACATATGTGCTCAATGCTAATATACTCTCTTGTTTTTAGCTCGATGCTACGCTGTAAACACTCTTGTAATGTCTTACTCACGGGTTATCTGAACACCTTTCATTTGTGTCTCCATCTAATTCATTCACTAAGAGGTAGTTTAATGCTGATTATATTGAATATTGACTGTTTAACTGAACATATGCTTGTGTAAACTCTTGAAGAGACGCAAACGCTTTATTTTGCAGTAAAACAGAATTTGGGATTAGTATAATAATATAAAACACTTAATTCATTAAAATATTGAGAGATAAATGTAAGCAATCAGAGACATGATCACGCTGCACACATGAGATGTAGAATCGGCCACTCAAGACTTACACACACATTTATTGAACAGGGGAGAAACACCTATTTGTAGCTTGTTTAAGAATATTTTAATGATAAAACATTTTAATAGCTTGCATTTTTGAATTGTGTTCCTGTGAATATAGCCAATGCGGCTAATATGGCATTTAAATATCAACTTATAAATATGAGCAAACAGAATGTGTTAGAAGTTAGACAAAATGTGAGTGTTTTTAATGTTGACAGATTTGTCCCTCCTCCTCCAG
Seq C2 exon
TGAAGCTCCTCCTCCTTCAGTTCAGCTATAAACACAGGAATATTCCCATCAGGATCAAGTGAAGAGTTTACTGAAGGACAGTGAGAACATGAGTGATCCAGAACCCTGCAGAATTAAACATGAAGATGCTGAACAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103222:ENSDART00000162162:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.895
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCGGCTTTCTCAGAACT
R:
TGTTGTTCAGCATCTTCATGTTT
Band lengths:
319-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]