DreINT0003907 @ danRer10
Intron Retention
Gene
ENSDARG00000058940 | C8H9orf116
Description
chromosome 9 open reading frame 116 [Source:HGNC Symbol;Acc:HGNC:28435]
Coordinates
chr8:11505888-11508470:-
Coord C1 exon
chr8:11508250-11508470
Coord A exon
chr8:11505967-11508249
Coord C2 exon
chr8:11505888-11505966
Length
2283 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATCTTCATTGTATATTTCAGTCA
3' ss Score
6.92
Exon sequences
Seq C1 exon
GGGTCACATTACGTCACCTGGTTACAGTGTTTATAGCAACCACACGGATAATGCCTCAACACAAACATGAGCACAAACGAAATAAAGAACGATTATTCAGCGAAAGAAGAGACCGCAGGGCCTGGAGATTCTAATACATCTGAAATAAAGACAAGCGATGTGTACAAAGTTGACAAAAACTTACCGTCTCGCTTTAATAACCCGGATTGTTTCAGATACAG
Seq A exon
GTAAGAAGAGCCAGCCTTGATGTGTCCAAAGTGCGGAAGTTGAAGTCAATATACTTGACGTTTTTAGCACTTTAGTTGAATATTCTTCAAGAGTGAACTTTTAACACCTGCTTGCTTGGATGTTTTTAAATAGTTTATTAGTTGTTTGAGGCGTTAACGCAGTAATTAGCCATAGTTTGTTAAACAGGTTGCATCGCTTCCGGTTCAGGTCCTTTATGTGTGTATCTCGATTAAAGCGATAAATAGTTTTACTTATTTCTTCTCAGTTGCATTATGGAATAAAATTAAATAAGAACGGACAATAATACAACAAGCTATAAATAACAGGGATCCTTGAAAATTTTGAATTTCTTAGGATGTTTATTTTCCAAGTAACTTAAGAGTTTCAGTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAGTCTATAAACAGGGTTCATACAAATTTTTACCACTAAAATTCTATAACTTTTCCACGATTTTTCCAAGACTTTCAGGTAAATTTTCATCACCTAATGTTTCATGCAATGTCTACATACATACAGTATGCGTAGTAAAAGAAAAACAATGCACGCAACAATCTATTCAGTTTGAATATATATTTATATCTATGTAAAATTTATTTAGAATATGCTTACACGCACTAATAATGTGAGAGTATGTGATTGGCCAAGGACAGAAAAGTAAAGACAATTAACCCAAAATAAATATCAATTTTCCAAAACTTTTCCAGGCCTGGAAAATGTCATGTCAAAGTTCCATGACTTTTCCAAGTTTTCCATGACCGTATAACCCTGTATTAATGTCTGATAACACATTTTTTGACGAAATTACACTTCAGACATGTATTCATTTGTTGTGGTTGAAAATCAGGATTATTCCATTAAATGTAGTTTTCTTCTGAAGGTATAATATTGTTTTTTATATAACACTTTACAAAATGATTCAATTAGTTCATGTTAATCATATTTACTTACATGAATTAAAAATGACCAATATAACAGTATTTGTTCACTTCTGTTGGCAAAAGAAAAAGTTGTTAATTAGTTCTTTACACAACTCTAGAGTTTAATAATGCATTAGTAAATTCTAAACTATGATTAATAAAAGCTGTACAAGACAAGTACACTACTTGACGAAAGTCTTGTCGCCTATCCAAGTTTTAGGAACAACAAATAATAACTTGACTTCTAGTTGATCATTTGGTATCAGAAGTGGCTTATATGAAACGCAAAATAAATAAATGATCGTGATTTTTAATTATTTAATTAGGACAGTAAGAATTGACTTTGCTTAGACAAAATTCTTGTCACTTAACAAAAATAATGTAGAGTACAGAATATAAAGTCATGGAAAAATAATTAAAATTGTGTATGACTCTCATGAGCTTGGAGGACTGCATCCATACATCTCTGCGAAGACTCAGGTAACTTATTGATAAAGTCATCTGGAATGGCAAAAACAGCGTTCTTGCAGGACTCCCAGAGTTCATCAAGATTCTTTGGATTTACCTTCAATGCCTCCTCCATCTTACCCCAGACATGCTCAGTAACGTTCATGTCTGGTGACTGGGCTGGCCAATCATGGAGCACCTTGACCTTCTTTGCTTTCAGGAACTTTGATATGGAGGCTGAAGTATGAGAAGGAGTATTTGCTCTCTCCTGTGGTTTGTATGGTTATGGTCAGGACAAATATCTTGATGCCTCAGGCTGTTGATGTTGCCTTGCACTCTGCAGATCTCTTGCATACCATGCAGGTTCTAATAGGTCTTCTGCAGCATTTGTGATGATTGGGATGCAGTTCAACAGATGATTCATCAGAAAAATCTACCTTCTGTCACTTTTCCAAATGAATATCTACTGTAGAAGTCAAGTTATTATTTGTTGCTCTTTCAACTGGGATCGACAAGTTTTTTTTTAGGTAATTTATTGTTCATTCTTAGTTCATGTTAAATGTAAAGTGTTGCCATATCAAGTTATTTAAACATAGAATATAATTGTTATTTTGACCAATTGTCAGTTTATACTCTAAATGAGTTTGAATTAAAGAACAACTCAGACTCATCGCTAAATGAGTTTGAAATCAAAACAAGCATTTTACTGAACTATAAATTGTAAACTTAACTATGAATTGTAAATCCAGAGAAACTGAGAATTTCTAAATGCTCTTCATTACTATAAAATACAATATATGTGTATTCTAATGATCTTCATTGTATATTTCAG
Seq C2 exon
TCACAAAACAACCAATCCACTGTACCGAACAACAAACCAAGCATATGGAAGCAAAAAACCAACAGTTCACGAAATGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058940:ENSDART00000081909:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.815
Domain overlap (PFAM):
C1:
PF148921=DUF4490=PU(42.3=84.6)
A:
NA
C2:
PF148921=DUF4490=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]