DreINT0004154 @ danRer10
Intron Retention
Gene
ENSDARG00000039164 | CABZ01031754.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7FAH6]
Coordinates
chr22:5324806-5326217:-
Coord C1 exon
chr22:5325939-5326217
Coord A exon
chr22:5325124-5325938
Coord C2 exon
chr22:5324806-5325123
Length
815 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGTTCTGTGTTTTCTTTTAGCGC
3' ss Score
11.65
Exon sequences
Seq C1 exon
GTGCTCATACATATCAGGGGAGGCATGGATGTTCCTGGGAAGATAAAACCAATTACCATGATGAGTTTCATGATTATGCATATGACGGAGATGATTTTATCACACTAGATGTGAAGAAAATCAAATACAGAGCATCTGTATCAAAGGCAAAATATATAGTGAAGAAGTGGAACAATGACAGAGAACAGAATAAAACACTAAAAGAGTACTATAAACTTGGATGTATTTACTGGCTGATAGAGTTCTTAGTTTTCACTAAAAATGCCTTTGGAGGAACAG
Seq A exon
GTATGTATGAAAATAATTAACGTACGAGACACTTGATTATATATTTCTTGCATATGCAGATCCCTGATAAACATCGCTAAAAACAGAGCAGGATAAATGTATCAATAATGCAGTAAGCTAATTTTGTCAGACGATGTTGATATTTGAAACAACCAAAACAAACACACCCATAATCCACATGTCTTTTAAAATCTTCTCTAACATTAGTAGACACATCACTTCACTCTTATTGGCTGCAAGTGTGCTTAGGGACCACTTCACTGATGAAGAGCATTTGTTCAATATTGCTTAAAGGGCACCTATGATGAAAATAAACTCTTGTAAGCTGTTTGGACAGAACTGTGTGTTAGTGTGTCCTTAGACATATTGGGGTGATAGAAGCTTCTTTTTTTTAAATTCCTGACATCCAAATCCCTGTGATTTTGGGGACCACCACAACGTGACCTAGGAGTGCAGTTTCCCCTGCCCACTGAGATTTCAGAAAAGCTTGAATAAACTCCACCACAAATACATCAAATAAACTTATTTGGTATTTTTGACTAATGAGCTGTATTTCAGCTTTATCCGGGTCTGTCTCTGTCACTGACTGCAGTTTATAAGCACGTGGGAATGGTGGGCGGGGAGAAGCAGCTCATTTGCATTTAAAGCCACAGGCTATTTTTTCATTCTGGAGACACAAAAGTCTTGTCTTACAACTTGTAAAATGGGCAAAACAGGTGCCCTTTAATAGACCTGTTATAAAGTTAAACTGGGAAAAAATACTGTGTATTTGTTTCTCTGTTCTCAGTTTTAATCTGTTCTGTGTTTTCTTTTAG
Seq C2 exon
CGCCGAAAATGTTTCTGTTGCAGAAGAGCCCAAATTCAGATGTGAAATGTCATGTCACAGGGTTTTACTCCAATAACATTGTCATATTGTGGATGAAGAATGGACAGGAAGTAAGCAATTCAGCTTTGTTAAAGTCTGGAGAAATTTTGCCAAATGAAGATGGAACCTTCCAGAGAACTGTAACTCTAAGAGTTTCTTTACAATACTGGAGGAAGGAGCAGTACACTTGTGTGGTGAGGTACATGGAAAAGACCATTCGGAGGAATTTGACTGAGGAGGAGATCAAGAGTAACTACAGTGAGATGAGTATTACTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039164:ENSDART00000057224:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(51.1=94.7)
A:
NA
C2:
PF0765410=C1-set=WD(100=76.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATCAGGGGAGGCATGGA
R:
GGAGTAAAACCCTGTGACATGACA
Band lengths:
342-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]