DreINT0004155 @ danRer10
Intron Retention
Gene
ENSDARG00000039164 | CABZ01031754.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7FAH6]
Coordinates
chr22:5324575-5325123:-
Coord C1 exon
chr22:5324806-5325123
Coord A exon
chr22:5324663-5324805
Coord C2 exon
chr22:5324575-5324662
Length
143 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
GTATGCATTTCATTTTTCAGCAG
3' ss Score
7.42
Exon sequences
Seq C1 exon
CGCCGAAAATGTTTCTGTTGCAGAAGAGCCCAAATTCAGATGTGAAATGTCATGTCACAGGGTTTTACTCCAATAACATTGTCATATTGTGGATGAAGAATGGACAGGAAGTAAGCAATTCAGCTTTGTTAAAGTCTGGAGAAATTTTGCCAAATGAAGATGGAACCTTCCAGAGAACTGTAACTCTAAGAGTTTCTTTACAATACTGGAGGAAGGAGCAGTACACTTGTGTGGTGAGGTACATGGAAAAGACCATTCGGAGGAATTTGACTGAGGAGGAGATCAAGAGTAACTACAGTGAGATGAGTATTACTGCAT
Seq A exon
GTAGGTTGGATTAATAACAGAAGGCAACTATTAAAAAAAAAAACAGGATGGATTTGCTTTTTATTCTTTCTGTTTTTGTTTTGGGTTTCTTTGTTCAGGCATTTTGGCTGTCATTATTAATATGTATGCATTTCATTTTTCAG
Seq C2 exon
CAGATTCATCAACATCAATTCTTGTACCTATTATTGTGGTAGTTTTGGTTGTATCACTGATTTTGTGGTGGATGAGTTGTCACCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039164:ENSDART00000057224:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=76.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAATGAAGATGGAACCT
R:
GGTGACAACTCATCCACCACA
Band lengths:
255-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]