DreINT0005512 @ danRer10
Intron Retention
Gene
ENSDARG00000104261 | CABZ01111729.1
Description
NA
Coordinates
KN150521.1:18961-19487:-
Coord C1 exon
KN150521.1:19449-19487
Coord A exon
KN150521.1:19362-19448
Coord C2 exon
KN150521.1:18961-19361
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
AATCTTCTGTTTCTTTGTAGGTG
3' ss Score
11.46
Exon sequences
Seq C1 exon
GCCAGCACACCTCTTGATGGATGTGGCACTACGTTAGAG
Seq A exon
GTGAAGCATTTACAAAACATTAACAACAACATCCAGATCCTGTAAATTCCAGAGCTTAACTATATCAAATCTTCTGTTTCTTTGTAG
Seq C2 exon
GTGACAGACAACGAACTCATCTTTAAGAATAAAGTCACCACATTTGCCGATCCCCAGGACATTAAAATCAGAAATAACAACATAGAAATTGAAATTATGTGCGTGTACCAGAAAAACGCAGACGTTTCACAGGAGTTTGATATTCACAAGTCTCCAATCAAAGTCTCAGAAAAGAGTTATGGCACAATGAACTATCACTTTGAGTTTTACCCATCTAACAGTTTCCAAAACATGACTGATCCAAGTGCCTTCCCTCTTGAGTATAATGTGGGAGATATGATCTACATGAAGATCGAGCCTGACTATCCAGTCCCAAACACTGAGCTGTTTCTTGAGTCCTGTATGGCTACGCCTTTTGATACTCCCAATTACCCGGTCTCCTATCCCATCATCACCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104261:ENSDART00000161831:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(5.9=92.3)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(64.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTGATGGATGTGGCAC
R:
AACTCCTGTGAAACGTCTGCG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]