DreINT0005572 @ danRer10
Intron Retention
Gene
ENSDARG00000102165 | CABZ01112804.2
Description
NA
Coordinates
KN150518.1:28933-31641:-
Coord C1 exon
KN150518.1:31621-31641
Coord A exon
KN150518.1:29059-31620
Coord C2 exon
KN150518.1:28933-29058
Length
2562 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GTGTGTGTTGTCTCCATCAGGCC
3' ss Score
9.76
Exon sequences
Seq C1 exon
ATTCGTTCGTGGCTCTGAACG
Seq A exon
GTGAGTGAAACGCTCCATCTTCTTCTTCTTTCTCTCCTCATTTTCAGACTCTCATTAGCCGAGTGTTTCATGTCTGTAATGGCTTTTCTTGTAGAGCTCCAGCGCAGGAGTGATTTTACCCAGAATGCTCCACGCGGTCAGTTTCTCCAGTCTTTCTGTGTGTAGCTGTAGTGTTTGTTAGAGTCGCTGCTCATTGATTCGCTCTGACCTTTCCTTCTCTAATTGGATCTCTGTGGTTCACAGAGCACAGGATTGTGGGTTAGAGATGGTCAAATGCAAATGATGTTTACAGGGAATAAACACTGGCGCTTCCTCCCGAGACCCAGCAGAAATTATTCATGAAATACAATCAGGACAAAAACAGGCCGATGATGGAGAGCGGAGTCCCGGACGGCGGTTGTGACCTACATAAAGCGGAGTTCAGATCTTCAGCTGAGCTTCAGAGTTTCAGCTCTCTGGCCTTTATACAGCTCATAATGTGTGTTTATGTTTTAAACACACACACACACACACACACACACACACACACACATGCAGACGGCTGGTTATTCCTTCAGCTGCTGGTTTAGACACGGCTTTTCTCCTCCTCTTCTTCTCGTATGTGTGTCAGCGTCCGCCGGCTCTTCCTCTGGCGGAGGAAAATGAATTATAAAATAGAGCTGTCACACTAATCTGGCGGCCCGTGGCGCTTTCTTAAATAAATCATTTTAATGACTGCGGCTGGAGCTGCTCGGCGCGGCGGTAAACAACAGAGAGTTTATCAGTGGATTAACACACGCTGGCTTTGATCAACCGTCCTGAGATTCACTAATTCTGCTTATTTATCAGCCAATCTCTCTTGACCTGAAATATGAAGTGTGATGCTTCAGGAGTTCAGCAGATGAAGAGTGAGATCTGAGGATGCTTTAGTGAACTGATGTGTGCTGTAGGAAACTAGAAATGAGTTAGTAGACTAGATTAGCGCAGCTGACGTCAGATTGATTTAGGTTTTTCAGTTTCACCAGCCTGATCTCACCAGGAAACCTGAGTATTTGACGTTTTGTCAGTTTAGTGGCGAATTCGTACGAGTTCAGTCGTATGAAAACTGTACGATTTTAAAAAGGAGGCGTGGCACCTAACCCCACCCCTAACCCTAACCGTCATTGGGTGATGAGCAAATCGTACTAAATTGTACGAATTAGATCATATGAATTCATACGAATTAGCCGCTTAATCAAGAAGTTACGAGTTGCCGTGAGATTGCGTTGGGGTCACACATCAGTGATGAACGTAATCCTGCTTATTACTCACATCCAAAGCAAATCAACCAGTAGATGTGAAATGCTGATTATAATGTGGATTACAGTGTGAATGGTGTTGAGATGGGCGGATAAACAAGCATACACCTGCTCAATCATGATGACTGTGATGACGTTGGGTTCAGGTTAGGTTTTGGGGCAGGCCACGGAAATATCATTAACCTCAGAGATAAGATGTCCCGTCCTCACTAAGATAGAAAAACAAACATGTGTGTCTCAGATGTTGATGTGTGCTGAGTGTTAAGCGTGTGTGTACAGGTTTATGTGGTTTATGAGGACGCACAATTATATAATGACATTGGTATGACCTAGTTAAGGTGGTTTACGAGGACAGGTGTCCTTATAATTCAAAACACTTCCTGCTCAAAATTTGCCACAGGTTTAGGGAGGGTGGGGTTAGTGCAGGGGGAGGGGCTTATAATCAGGGTTTTTACTGTATAAAATATGTCACGCCTGTGGAGAGTCCTCATAAACCATATACAGCTGATGTCAGAATTATGAGCCCCTTTGAATTTGTTTTTCTTATTTAAATATTTCCCAAATGATGTTGAACAGATTCAGGAAATGTTCACAGTGTGTCTGATAATATTTTATCTTCTGGAGAAAGTCTTATTTGTTTTATTTTGGCTAGAATAAAAGCAGTTTTAAATTTTTTTAAACCTCATTTTAAGGTCAATATTATTCGCCCCTTTAAGCTATTTTTTTTCCGATAGTCTCCAGAACAAACCATCATTATACAGTAACTTGCCTAATTACCATAACCTGCCTAGTTACCCTAATTACCCTAGTGAAGCCTTTACATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAGAATATCTAGTCTAATATTATTTACTGTCATCATGACAAAGAGGAAATAGATCAGTTATTAGAGATGAGTTATTAACACTATTATGATTAGAGATGAGCTGGAGAAATCTGCAGAACAGATATTGGGGGAAAAACAATTCAGGGGAACTAATAAGTCTGACTTCAAGTGTATGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTCAGCTGTTGACATGTATATGTGTGTGTGTATGTGAGTGTATATGTATCTCAGCTGTCGACATGTATGTGAGTGCATGTGTGTGTGTGTGTCTCAGCTGTTGACGTGTGTGTTGTCTCCATCAG
Seq C2 exon
GCCGTGTCTCCTCCCCCTCAGTGTCTCCAGCAGTGGTCAGTGTTCCTCTGGGTCGGGGTCGAGTGCTGAAGGATCACCAGGAGCCGCTGGTGTCCGGGTCCTCAGAGACGCAGCAGGAGAGCGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102165:ENSDART00000170394:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.349
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(1.8=12.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]