DreINT0005728 @ danRer10
Intron Retention
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6595825-6600312:-
Coord C1 exon
chr7:6599942-6600312
Coord A exon
chr7:6595895-6599941
Coord C2 exon
chr7:6595825-6595894
Length
4047 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTGTTTGTGTTTCTTCAGGAA
3' ss Score
11.43
Exon sequences
Seq C1 exon
GACTTTGAAACCAGATCCATTGGCCGATCACTGGGTTGTGATTGGCTTGTTTTTTCGTCAGTTCTCATTGGCTGTCTGGAAAAGTGTCGTCTGCTAGTGTGCTTTAGTCAAACTGAAACATGGAGCCCATCTGCGCCACTGGAATGGCTGCGAGGCTGCGGAGTCAGTGGGATCGAGACGCGGGTTTGGGTCAAAACCACAACGCTGTCAAGTTCTTGGGTCAAGATTACGAGACGCTGAGAGCTCAGAGCCAGCAGAGCAGACGACTGTTTGAGGATCCAATGTTCACCGCCAGCAGCTCTTCTCTGGGCTTCAATGAACTCGGCCCGCGATCCTCCAAAACACAAGGAGTGCGCTGGATGAGACCCAAG
Seq A exon
GTGAGCGCAGGACTGTACTGACTCAATATATGCTGGAAACTACTGATGATGTTTGTATTATATATATATATATATATATATATATATATATATATATATATATATATATACATACATATATATACATATATGTATGTGTTGATAAAATATTACTAAATTCTCATTGTCATATTTCTAAGATGTTTAACAGATTGTGGAATTTTTCCCAGTATTTTATATAATATTTTTTCTTCTAGAAAAAGTCTTATTTTTTTCCATTTCAGCTAGAATAAAACCAGTTTTTAATTAAGGTCGATATTATTAGTCCTCTTGAAGAATATTTGTTTTGGATTGTCTACAGCAGTGGTTCCCAACAGGGGGGGTCGTGGCCTACAAGGGGGCCTCAGCGAGCTTTGTGGGGGGGGTCGCGTCATATTTAAATAAAGTCTTTGCAGTGGACAATTAGAATGATCATTTTGTGTTAGTTCATTTAATCCCCAGTGGATCAATTGGTTCTGGGCCACACAAGAAATCATTAATTATTTCCATTTATTTATTATCTGAGTCTGAACGATCTTTTATTTTGAAAAATGAGCGAATTCTTGTGCCTACGTCTCGGTCAGTCACTTGAGCACCAAAATTTAATCCACAAGCAGCAAAATTAGCAAGAAACAGGCGTCTTTAGAAACGACTCGCGAACTGTCAAGGAATAGATCCGCAACCCACTTGTCAACAAACCAGATGAATCCACCATGGCTGTGCAAGAAAATCAACTGATGGAGATTGCAAATGACGGCGGCATTTCAAGAGTTTGCAAAAGTTTGTTTACAATGGAGGTGTGGCCTGCGCACACATGCGGTGTGAAACCCTCGCACCAATGAACCCCAGGCCACGACGGACCGCCAACGTGTCCAGCACATGTTTTATGCAGCGAATGCTCTTCCAGCTGTAACCCATCTCTGGGAAACTTTAGGCTATTATTTGTGCATAAACATATCTAAATATAGTAATAAACATACTGTTTGTTTGAAAACAAATTTTTTTTGTCATCATTACTGCAAAATTTTATGAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGGCTGTACACCATATCAATAAAGTGTTTACACTATTAAAAACACTGCTGTAATACATTGAGCCACTAAACATTGTTCTTATGACATTTTTCTACTGGAGGAAAATGCTAATTACATCCAAATACTTCAGCTATAGTCTGTGTTAGTAAATGCAAGACCATTGATGAAATCCAGCATAACACTGTATGACAACGCTTCAGATGACTGTTCTAGAGCCCACAGCTAATCAATCTGACAGATTCTGGAGTGCACTACAGCTCTAAATATAAATATAAACCATAATAAATGATCTTAAATAAAACAAATACATGTATAGAGATGGTATATACTTTCGATCACCTATGAAATGGAGGCCTTGTGAATGGTTTGTGAGCACAATTAAGTGCACACAGCATGCCATATCATCTGATAATTGTAGGAAATAATCCCAAACAGCATCTGACTGTGTAAAGCCACATAAAACAACACAAAAACCCGATGAATATGCTGAGTTCAGCAGCTAATCAGCCGGAATCAGCTGAGGTGACGAGACAGCGAGCAGCGAGACCTAGCTGTCACTCAAGTGGCCACGCCCTTAATTATGCAGACTTAATATAACTTAATATAAACGAAACGGTTGAGTTATATAAAAAAAAATTCACGCCCACACAGTACTCATGAAGGGTAATATTAGCTTTATACACCAAAACCATCTTTTGTAGCAGGCTGTAAACATGTTTTTATCAGCTTTAAAGGGCCATGAAACCCCTTCGTTTCAGCAGGGTGTTTTCACACCTCTACTTTGGAAAAAGTCAGAAAAGTGGGCGTGTCCAGCTCTGTTTAGGGGGCAGTGTCGGAGGAAGAAAAGAGGCTTGGTATGGGAGTGTCTATTTGGGCGCGCTGACTTTCAGAGTCAAAACACACACACACACACACACACACACACACACACACACACACACACACAGGGGACAAAGTGACGGTGTTTACATGGACATCTGTAGTCGAATTATTTGCCAAATTATTAAATGGTGGACTTTAACTGCAGTTTGGCTCTTTCATTCAGGAAATTCAGTCATGCCCCTCGTGACAAACAAGATATTTGATTCAAGGCGCTGCTCTAAGCGTGTATTTTTCATGCAATATTTGATACCGCACGGCGAATGAGAGAAAAAAAACTCAGCATTTCCCGGAAACTTAGATGCACACGGCAGGTAGCGTCAGAAAGCCGCGTGTGTTATTCTGGTCACAAAATCCAACACGAGGTTATAGTTTGGTTGTAGTGCTAACTTGTTTACACTCGGTGCAATAGTTTGTTTGATGCGAATAAAATACGAACTGAATAAACAAAGAGCACTGGTCGCTCACTTACCAAATCTGTAGAGACAGGACAATCACCAGCAACTAGAGCCGCGTCTTTATTAAGAGGAGACTACAAGCGAATCCGGATCTCAGCGTTTGCAGATGAGAACAGCTCTCAGGTAAACAATAATCCTCCTTAGACACGTAAATTATTGTTGTCGAGCGTCGCGTACACTGTTAATCCACACGTGACTCCAGCTGCGCTCTCACAGAGAGAAAATAAAAACAAAACTTAACTGCAGCAAACTATAAAAGCAACACTTCACGCTTGTTTTGCCAACACAATGTGGCGTCTCTGTCGTCTAAACACTGTGACAGTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGATTGGTTTGAACCAAGCCTTACTCATGCATTAATGCATCACACTGTAAGACGTAATAAGACACACTCTGGCACAGTCGTCCAGTCTGCACGCTGGAATACACGCTATTATGTCATGACCGTGACGCAGCTTCAAAAATGCGTTTCAAACCGGAAGTACGAATTTGCTTGAAATAACGCAAAAACAACCAATTTACACTTTTTAGTGAAATATAGGTGTCCTAATAGTGTTTATAGCAGTGTGGGACACATATACGACTGTCAACAGCTCAAAACATGTGATTTGGTGTTTCGTGACCCTTTAAAATTGGCCAATTTAGCATTGCAGTCAGTGAGCATCTGTTCTTCCTGCAGTCAGCCCCCAAAGGCCAGTCGATGAATTGCAGTTTCAGTTACTTCCGTATTGGCTTCATGAGAGAGAGCAGGATGTTGCCGCTTGGTATATATAGATACTAGTATTCAGATAAAAGACTTAAATAGGTTGAATAGTCAAATTAGACTTGCATACTTAAATTCACACACAGACGCACGCTGTAGATAGAGATATATGAGCAATTCCATGCATATGTCATCCTTGCCATGAAAAAAATTAGGTTTTCGACAAAATAGCAAAACCGTCTCTGTGTTTTTTGTGTAGGCTTGTATTTTACAAAGCTTTAAAAATACTCAAAAATGTCTCTGTCAGGGTTTTCAAACGATTATATTTGATTTTCCAAAGTCACACAAGTGGCAATTTCACATCAGTCACATCCATAATGGAGATATGTCACATCCATAACGACACTTTTCCCTCATAAATGCAAAAATGTCAAATAAACTAAACTCAGTCATGTTTGTCCTATAGTGAGCCGACTCTTATCCTGTAGATTAACATCGTTTCTTTTGGGTTGTGCAGTTTAATTCACAGAATTTCTACAAAGTATACCTTATACTGTAAACTCACAGAATTTTTTGGTCACATCCATAAGGCACTTTTATTTTCCTCATTTAAAACCTAAAAGTTGTTCACAGATTGATATATTTCTGCTCTGTGGCTAGTTGTTTTGAAAAATAGAAAGAGATGTTTCAGTATAATGCTAACAACATATACTTTCTTTGTGAATTTATGTTTTGAGTTTTTACTGCAAATGTCACATCCATAGCGCTGGAATTGCTCAGGTATAGATGTAATGTAGCTGTGTTTGTGTTTCTTCAG
Seq C2 exon
GAAATGTGTGCGCGTCCTCAGTTTATCGTGGATGGAGCCACTCGCACAGACATCTGTCAGGGAGCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199:ENSDART00000113658:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=40.5)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]