DreINT0007597 @ danRer10
Intron Retention
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21680113-21680498:-
Coord C1 exon
chr24:21680401-21680498
Coord A exon
chr24:21680223-21680400
Coord C2 exon
chr24:21680113-21680222
Length
178 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GAGTCTGGTTTCTCTTTTAGGCT
3' ss Score
9.27
Exon sequences
Seq C1 exon
AGTGTGGCGGTTTCCTCACGGCATGGAATGGCACCGTGACGTCCCCTTATTACCCCGCCTACTACCCTCCGAATGTGGACTGTAACTGGAAAATCAGG
Seq A exon
GTGAGCTAAGGCTAAAGGCTTTCCCATGCATCCCATGAGTCTCTTCCCCAGTGTTAGCATGGATGCCCTATAATCCCCATTCAGAGGCCTGGGATGCTCCCTCTTTGAGACGAGGAGCGCAGGGTGGCTGCTGCTTTGTGTGAGAGTGCGTCTGTTGAGAGTCTGGTTTCTCTTTTAG
Seq C2 exon
GCTCCGTTGCCAGGATACCTTCTCTCCATCACCATTGTGATGCTCGACATTCAGGATTCACCCGCCTCGAGCACCTGTGAAAAAGACTGGCTGGAAATAGGTGGCGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758:ENSDART00000091096:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(29.2=93.9)
A:
NA
C2:
PF0043115=CUB=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCGGTTTCCTCACG
R:
GCCACCTATTTCCAGCCAGTC
Band lengths:
202-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]