DreINT0008270 @ danRer10
Intron Retention
Gene
ENSDARG00000101017 | CT583642.2
Description
NA
Coordinates
chr3:32847777-32848628:-
Coord C1 exon
chr3:32848317-32848628
Coord A exon
chr3:32848098-32848316
Coord C2 exon
chr3:32847777-32848097
Length
219 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TGTTTATAAATGTATGTAAGTGT
3' ss Score
1.58
Exon sequences
Seq C1 exon
GATATTCCCTCAGACTGATTAATGGTAATAATGACTGCTCTGGGAGAGTGGAGATCCTGTATAATGGTGTGTGGGGAACCGTGTGTGATGATGACTGGGACATGAATGATGCTGCTGTGGTGTGCAGACAGATGGGATGTGGAGGAGCTGTCAGTGCACCACAGAGTGCTTCTTTTGGCCAGGGAAGGGGTCGAATTTGGTTGGATGATGTGAGATGTTCAGGAAGTGAATCCTCACTCACAGACTGCTCACACCGTGGTTTTGGAGAACATAACTGTGGACATTCTGAAGATGCAGGAGTTGTCTGCTTAG
Seq A exon
GTAAAGTCATGTTTGTTTTGTCCACATACAAAATGTTTCTGTATGTTATTTCTGTTATTTGAAAATGATGTTGTCTTAATTATTAAACTGGATGTTTTGAAAATATATATTACTTGTTTAATGAAAACAGCAAAATGTCTAGTTTATAGATATATACATTATATAAAATAGTAGCCAAATAAGCATTCTAATCATGTTGTGTTTATAAATGTATGTAAG
Seq C2 exon
TGTCAGACGTTAGATTGGTCGGTGGGTTTCATTCATGCTCTGGGAGAGTGGAGATCCAATATAATGGTGTGTGGGGAACCGTGTGTGATGATTCCTGGGACATGAATGATGCTGCTGTGGTGTGCAGACAGATGGGATGTGGAGGAGCTGTTAGTGCATCCCAGAGTGCTTCTTTTGGCCAGGGAAGTGGTCCAATCTGGTTGGATGATGTGGGATGTTCAGGAAGTGAATCCTCGCTGATACAATGCTCACGCAAAGGTTTTGGAGAACATAACTGTGGACATTCTGAAGATGCAGGAGTTGTCTGCACACAGGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101017:ENSDART00000157591:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGCAGACAGATGGGATG
R:
CCCAGGAATCATCACACACGG
Band lengths:
293-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]