DreINT0008618 @ danRer10
Intron Retention
Gene
ENSDARG00000098256 | CU914622.1
Description
NA
Coordinates
chr12:43984039-43984517:-
Coord C1 exon
chr12:43984221-43984517
Coord A exon
chr12:43984135-43984220
Coord C2 exon
chr12:43984039-43984134
Length
86 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAAT
5' ss Score
1.53
3' ss Seq
TTGTTTTGTTTTCCTTTCAGGCA
3' ss Score
11.48
Exon sequences
Seq C1 exon
GTTAATTATAATGGACTCCTTACTTTCAACCAGTCTTTAACAGAATCTCACCCTGAACCCTTTCCCACATATGGAAATGAAGATTACATTGCTGCGCTCTGGACTGACCTTGATGACATTGGTATTGGCAAATATTGGTATCAGGAGTACACAAATGGAAGTGTGCTCGACCGGGCCACTCAGGATATAAACCAGTATTTCCCTAACAAGGGCTTTACGGCTATTTGGGTCTTTGTTGTCACATGGGACTGTGTGCTTACATGGGATATGAATGCATATGATCGTCATTCAGACCCA
Seq A exon
GTAAATTTGATCTATCTATCTCTCAAAGCAGAATAGTGAAGGATAAATCAATTATGAATCATAATGTTGTTTTGTTTTCCTTTCAG
Seq C2 exon
GCAATCACTTTTCAAGTAGTTTTGATTTCAGGAGGTGGTTTTTCTTTCATTCTGATGAATTACGGTGACTGCGCAGCGATATCTTATCCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098256:ENSDART00000159106:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF061199=NIDO=PU(40.3=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAACAAGGGCTTTACGGC
R:
AAGATATCGCTGCGCAGTCAC
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]