DreINT0008835 @ danRer10
Intron Retention
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8356983-8357286:+
Coord C1 exon
chr21:8356983-8357093
Coord A exon
chr21:8357094-8357185
Coord C2 exon
chr21:8357186-8357286
Length
92 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
3' ss Seq
ATTATTATTCTCTCTCCTAGTTA
3' ss Score
7.4
Exon sequences
Seq C1 exon
AGAAATCTGACAGAGTATTTCGTAGCAGTGGATGTGAATAACATGCTACATCTGTACGCTAGCATGCTGTACGAAAGACGAATCCTCATCAGCTGCAGCAAACTGAGCACT
Seq A exon
GTGAGCAATATCTCTACCTCTGTCTAGCTGGTCATTTCTTTCCTTGTTTTAAAGGTGTTATTAAGGGTTGTTATTATTATTCTCTCTCCTAG
Seq C2 exon
TTAACTGCATGTGTTCATGGCGCAGCAGCCATGTTGTATCCCATGTACTGGCAGCATGTTTACATTCCAGTCCTGCCACAGCACTTATTAGACTATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592:ENSDART00000143151:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.9=100)
A:
NA
C2:
PF0214116=DENN=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGTAGCAGTGGATGTGAA
R:
CTGTGGCAGGACTGGAATGTA
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]