DreINT0008848 @ danRer10
Intron Retention
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55521766-55523112:-
Coord C1 exon
chr1:55523030-55523112
Coord A exon
chr1:55521980-55523029
Coord C2 exon
chr1:55521766-55521979
Length
1050 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACCTGTGTCTCGGCCTGCAGCGC
3' ss Score
9.54
Exon sequences
Seq C1 exon
TCTCGTCCTCGACGGCCTGCACAGAAACACCATCGGCAAAAAGAGCAAAAGACACCAGTTAACAACACCACCTATGAGGACAG
Seq A exon
GTGAGAAGATCCATCCATCCATCTATATATCTGTCTATCTGTCTACCCACCCACTAATATTTTTATCAGTCCATCCATTCCCTTTCATCCATACATCCATCTATACATTCAATTATCATACATCTACACCTCCACTCATCTATAATATATATATATATATATGTCCATCCATTCATCTTTCCAGCGGTTCATTTATTCATCCATCCAGCTATAAATTCACCTACCTACACATCATTCATCCATACAACCATTCATCAATCCACCCACCTATATAAAATTTATTCATCTATACACCCACCCACCCATAGATCATCTATTTATCTACCCATACATTTATTCATCCATCCATACCACTATACATTCATTCATTCATCCACCCATAGATTAACCATATAAATACACCCATACATCTATACACTCATTCATTCATCCACCCATACATCATCCATCCACCCAGCCATAGATCATCTATTCATCTACCCATACATTCATTCATCCATCCACCCATAGATTAAGCATATAAATACACCCATGCATCATCCATCCACCCACCCACGCATACATTATCCATCCATCCATCCACCCATACATCTATAAGTCCACCAACCCATAGATCACCCATTCATCTATACAACCATCCATCACCCACCCATACATCTATACATTCATCCATCCATCGAACCATACATCTATACATGCATTCATCCATCCATCCACCCATAAATCATCCATTAATACAACCATCCATCCATTCATCCACAGAACCATACATCTATTCATGCATTCATCCATCAACCACCCATAAATCATCCATTCATACATCCATCCATCCATCCAACCACAAAACCATACATCTATACATGCATTCATCCATCCATCCTACCATACATCATCCATTCATACAACCATACATCCACCCATACACTCATGCAACCATCCATCAACCCACATATCATCCATCCATCCATCCATCCATCCATCCATCTATACATTCATTTATACATCCTTCCATCCATCCCTCAACCTCTCCACCTGTGTCTCGGCCTGCAG
Seq C2 exon
CGCAGCAGATGCTGTAGATCAGTGTTCTGGCAGCAGTGACGTACAGGAGGAGGAGGAGGAGGATTTCTCTCTGCTGGCCGATGCGGAGGAGATGGACCTGCTGGGCGAGATCTTCGACACCCTGAGCGCTCAGAGCTCCAGAGAGCCGGGTTTACTGTACGGCACACGCAGCCTCGACCTCTTCCGCTCCGACAGCAGCGAATTCATCTCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503:ENSDART00000142505:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCCTGCACAGAAACA
R:
ATGCGAGATGAATTCGCTGCT
Band lengths:
287-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]