DreINT0009177 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19397698-19399541:-
Coord C1 exon
chr16:19399422-19399541
Coord A exon
chr16:19397926-19399421
Coord C2 exon
chr16:19397698-19397925
Length
1496 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
AACTGACTTCTCTGTTTCAGAAT
3' ss Score
9.61
Exon sequences
Seq C1 exon
CTTGGCTTTACCACAGACAGAGGGAACTTCCATAATGTGTCCTTAGGTCAAGGACAAGAAACTGTAGCTGAAATAGCGTTGGAGACCGCAGCTAAAAATGGACATTGGGTCATGCTGCAG
Seq A exon
GTAGAATTTTGTGTTTGTGTTTTTTTTTTTTTTTAATCAAGACAACATACAACCATCAAAACCTGGAGAAGACCATAAAACTTTAAACAGAAAAAGGCCAAGCAATTAATTAAGTCATAAACCACCTTTTTTGCTATTTTTAATGTCATCTAAAGTCCACTTAAAGTGTTATTGAGAAAATATTAGTATAGACTCACACTAATATAGACACACACTGAGTCATGATATTTTAGTGACAGCAGTAAATAACAAAGCAACTATTTGAACTGTACAACCATTTGTAAATTATAAATTAACATTTATTTCTATATCTTTTTTATTCACAATGTTTCTTTATGGGCTGCTAGAAGAACATTTCCTGAGCCTCTTGGTATGGAAAGTCAGAAATGTCTGGCCCATTTATTGAGACATTTATTAAACATGTATAAAAATTTTGATGTGAACATGTCATGGCCAGAAGCACCTTTACAGAAAATAATTCATCCATTCATTTTACTTCGGCTTAGTGCCTTATTTATCAGGGGTCTCCAAAGCAGAATGAACCGCCACAGAAAATTACAAACAATGCAATTTGGAAACATTGCAAATTATAAAAGATGAAAATTAGTTCAAATGCACACCTATAAATCTAATACTTGTTTGCTCGTCTCGAACTATTTACAGCAGATCTCTCAAAGAGAGAGAGAGGGGATTTGCACTCGCGATATCTTTACTTTCTCTGTTCATTTAACTTATCAAATGTAATGTGTAGACCATCACTGCGTCTTGTGATCTGTTCACTTGCTCATTCACTCTTATCGGCAGATTTCCGGGTATTTTAATTCATTTTGACACGCAAAGATGCATGACCACAAAAGAGCATGACCACAGCCTGAGATATGTGCTATGTATCTGAAGAGTGGGGAAGGATACGGGACGTATTTGAGGACTGGCGGCAGATGCACGATTTCGGAGAGATTATCATTCGCTTTTCCCGGAAATGCATAGAGACTCCCGGAACTTTCAAGAGACTTGTGATGTCTTCATCTGTATATATTTTAGCTGCAGTGACGCAATCACAGAACTGAAATGACATGCTGTTGTGTAAATAAGACATAACATACAGCTATTTAGCTTGTTTATTAAAAAAAAGTTGTGATCTGGCACTATATAGTAGATAATACAATTAACAGCCATTGGGAGGGCGGGGCGCCCCCCTTATATAATGGTAGGGGAAACACTGAAGTATTTACTGATGTGGTTCCTGAAGTTTAGATCAGAATGAAGGTAATGCAAATACAACTTGCTACCACACTTGCAACAAATTGTTGTCATCCTTATCATTTAGTTTTTACTTTGAGCTACAGCATCTCTCATCATTTACCTACTGCTTGTGTAAATCAGTGGACAGAGCTAAAATGGCATTATAATAGAGAAAGTATGTTGAAAAATGACATAAAGCACTTTACAGTGGGTCTACTTTTCCGTATTTTTACTAACTGACTTCTCTGTTTCAG
Seq C2 exon
AATATCCACCTGCTATCACAGTGGTTGAGTCGTCTGGAGGAGATGTTGGAGAACACGGCTAGCAATGCTCACTCAAACTACAGAGTGTTCATGAGTGGAGAACCAGCTCCCAATCCACATGAGCATCTAATCCCTCGCACCATCCTGGAGAACTCTCTCAAACTCACCACTGAACCCCCAACTGGCATGAACTCTACCTTACATGCTGCTCTGGACAACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTACCACAGACAGAGGG
R:
TGCTGAAGTTGTCCAGAGCAG
Band lengths:
343-1839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]