DreINT0009275 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21355277-21359771:+
Coord C1 exon
chr7:21355277-21355351
Coord A exon
chr7:21355352-21359620
Coord C2 exon
chr7:21359621-21359771
Length
4269 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTCTCCCTGTCTTCTCCAGGAT
3' ss Score
12.88
Exon sequences
Seq C1 exon
GTATCTGTAGATACTCTTTCCTGGGAGTTCAGTGTCACCACAGTAGAGGACAACAATCTGCTTTTCCCTCCCAAG
Seq A exon
GTGAGTAACTGCTGCCCTCCTCTGTCTGCTACATGCTCATGCACCTGACATTTGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACACACATTTTAGCATTTCCATGTTTTGTGGGGACCTTTATGGGAATAATGATTGTAATACTGAACAAACTGCATTTTCTCTTCTGATTGTAATCCTAGTAGAGGAAGCATTCTGCATTTTTACATTTTTAAACATCTTAGTATGATTTCCATGTTGCATTTCTCTTAAGCTGAAGAACCAACCATAAGCACTATACTAACATTTAGTTTTTTTTTTCAGTAATTTTTATTTTATGAGCACAGTCAGGCATTTTCATGACTAATGCACACACTTAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAAGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTACACTCACTGGCCATTTTATTAGGTACACCTGTCCAGCTGCTCGTTAATGCAAATTTCTAATCGGCCAATCACATGGCAGCAACTCAGTACATGTAGACATGGTCAAGACGATCTGCTGCAGTTCAAACCGAGCATCAGAATAGGGAAGAAAGGGGATTTAAGTGAGTTTGAACGTGGCATGGATGTTGGTGGTCTGAGTATTTCAGAAACTGCTGATCTACTGGGATTTTCACGCACAACTATATCTAGGGTTAACAGAGAATAGTCAGAAAAAGAGAAAATATCCAGTGAACGGCAGCAAATGCCTTGTTGATACTAGAGGTCAGAGGAGAATTACCAGACCTTTTGAGCTGATAGAAAGGCAACAGGAATTCAAATAACCACTCGTTACAACTGAGGTATGCAGAAAAGTGCCTCTGAACACACAACACGTTGAACCTTGAGGCAGATGGGCTACAGCAGCAGAAGACCACACCGGGTGCCACTCCTGTAAGATAAGAACAAGAAACTGAAGCTATAATTCGCACAGGCTCACCAACAGGGGCGGACTGGGACTAAAAATCAGCCCTGGCATACCTGACAGCCCTGGCACACCGACACAGCCCCACCCAAGGACACGCACATTCACTACTTATATTTGTGTACAGATGGTAAAATTATATAAGCAGTACCTATTTAAGAGATATTTAAACACATAATGTATGTGACTGAAACAAAAACAACCCATTTATATATGCAATCATGTCATTAAGTTTCTTTTCGGCTTAGTCCCTTTATTAATCTGGGAATCGCCAACTTATCCTGCATATGTTTTATACAGTGGATGCCCTCAAAGCTGCAACCTATTACTGGGTTACCCAATTCCCAATTGGCCCACCCAGTTCACCTATAGCATGTGTTTGGACTTGTGAAGGAAACCAGAAGCAAACCCACGTGAACATGCAAACTCTACACAGAAACACCAACTGACCCAGATGAGGCTCAAACCAGCGACTTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCACTGCCCCCTTTCGAGACTAGCTCTGTTAATTTTATATAATTGGCAATGTCTGACTTGACTGCCTTTCCCTTTTTATGGTCCTTCTCTGACAATTAGCTTGTGTTGCACTTACTGTTTGACATTCTTGCCAAATTTTGATTATGTCTGTGTAACCTCAGATTAGGTTGGCCCATCTTGAAACCAGCCGGTTGTTGCTGATTGGGCCAATGCTTAACATTTACTGGTATTCTTTCTATTATCACCATCATCATCATAATATTCACATCTCGCACGAGATAAAAGCTGCCTACATTTAAAAAACAATACAGATGAAAAAAATAAATAAAATAAAAAAATAGCTGACCGGCCCACATTTAAAAAATGGTCCGGCCCTTCTGGCATTTGCCAGAATTGCCAGATGACCAGTTCGCCCCTGCTCACCAAAATTGGACAATAGAAAATTGGAAAAATGTTGTCTGGTCTGATGAGTCTCGATTTCTGTTGCAGCATAGAGGCGACCTAGGCGGCCGCCTAGGGCGGCAGAATAGAGAGGGCCGTGTCCGCGACACTACCCTCACCACCCGTGCCCTCAGTTAAATCGGCACCTAGGGCAGCAGAATGGAGAAGGTGGCGTCAGCTCTCTCGCCAACCACCCGCTTTCACTTTCGTGTTGAGGGGGGCGTGACCGTCCTTTGCCTAGAGCGTCAGTTCAGCTTGCTCTGGCCCTGATAACACACCATGTCATAAAGTGCAAATCATCTTAGACTGGTTGAACATGACAATGAGTTTACTGCACTCAGATGGCCTCCACAGTCACCAGATCTCAATCCAATAGAGCACCTTTGGGATGTGGGGGAACGAAAGATTTACAGTACATCATGGATGTGCAGCTGACAAACCTGCAGCAACTGTGTGATGCTGTCATGTCAATATAGACCAAAATCTCCGAGGAATATTTCTAGTACCTTAAATAAATACCTTAAATAAAAAGTTACTATTTTATTTGAAAGAGAAACATTTTTTAAATTTCTAAATGTATTCACAGTGAATTTTAATAAATTGAATACATGCTTTAAAAAATTAAAACATTATTTTGAAAAAATCTGAATTGTATATTAAACTTCAATTTAATAAATTATTTATTTTAATTTAATATTTAAATAATCATTGAAAAATTATTATAAAAATATATTTTTAAATGTATGTTAGATGAATGTTATAAATTATAAATTGTCAATTTATTTGTCAGACGTGCAAAATACATGATATTTAAATGCTGTAATTTAGGAAGCATTATTTTATTCAATATTATTACTTACTTCCTGGGCCGTTTATGTCGTTGTTGATATTTGGCCAAATCATGTTGGTGTTTCATTCTTTCATTCATTTTCTTTTCGGCTTAGTCCCTTTTTTAATCCTGTTTCCCCACAGCGGAATAAACCACCAACTTATTCAGCACATGTTTTACGCAGCGGATGCCCTTTTAGCTGCAACCCATTTCTGGAAAACATCCGTACACACTCATACACAACAGACAATTTAGCCTACCCAATTCACCTGTACCGCATGTCTTTGAACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCTCGCGAACGCAGGGAGAACATGCAAACTCCACACAGAAATGCCAACCGACCCAGCCAAAGCTCGAACTAGCGACCTTCTTGCTGTGAAGCTACAGCACTACCTACGGCGCCAATGTGTCGCCCCATGTTGGTGTGTAGTAATATCTAATTTTTTTTTACGAGGTGAATCAAAAGACCAACCCTCAACCCCCAACCTGGAGGACCAAGACATAGACACATAAACTACTAACAATTTAGCTTACCCAATTTACCTAGCCAACCCACGCCAACACGGGGATAACATGCAAACTCCACACAGAAATGCCCACTGACCTCGAACCAGCAACCTTCTTACTGTGAGGCGTCAGCCCTACCCACGAGAGGGGTCTGGATGCAGACCTGGTGCAGTGCAATCTGAGCTGCATCCAATGCTTTTTAATGCATTCACCTAACCCCACCCCTAACCCTACCCGTCACAGTGACGTCACCCACTACATTGAGTGCATTGTGTCTGACATTGCATCGCTGAGTGATGCAATCTCAGCTTGCATCATAAAAGCTGCATCCAGAAACTATTGCTACCCACTGCGTCACTGTGCCACCACATATTAATTAATATTATAATATTATATAGAACATTTTCTCACTAGGTATAACTTTTTTGTATCAGGATGAAAAGATATGTTTTGATTTAGGATCAGAAACATGTACAGTAGAAGGACTTCACAGAAACTGGCAGGAGTTTACAGAGACTATATTAATGCAGCATCCTAAAAATAGAAATAAAACCCCAGCAAGATGAAAACAGCCAAGAGACATTCATATACGTGTGAATTGACTCACCCTTATAAACAGCAGCAGTCCTCTGTTTTCTGTCTTTTGTTACAACACTTTATCTGTTGACTTGGAGACCGTCAAAGCACAAATAACTTTGTGAAACAAAATTTCCATGGATGCTTAGATAAATTCGGGAGTTTGCATATTTTAATGTGCCATTTAAATGTGTTCATTTTGATTGGCTGTCACTGTGCTCACACTAGTGTAGCACATTTTGCACACAGTAAATTTCCCATGTGCACTTATAGACTCTTAATGCTTTTGTTTTGCATGTGACCTCTTGTTTTTCTCCCTGTCTTCTCCAG
Seq C2 exon
GATGGAGTGCTCATCCAGGGTCTGTTTCTGGAAGGCGCAGGCTGGGATAAGAAAGCTTCCTGTCTGGTTGAGGCAGAGCCCATGCAGCTGGTCTGCCCAATGCCCACCATCCACTTCAAACCAGTGGAGAGCCGCAAGAGATTGGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:85
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]