DreINT0010625 @ danRer10
Intron Retention
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4104005-4104576:-
Coord C1 exon
chr22:4104454-4104576
Coord A exon
chr22:4104128-4104453
Coord C2 exon
chr22:4104005-4104127
Length
326 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GTGTGTGTGTTATTCCGCAGATG
3' ss Score
12.08
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGAAATCGGGGCTCATAACTGTGATCTGCATGCGGCGTGTGTGAACGCTCCCGGCAGCTTCAAGTGCCGATGCCGCGACGGCTGGGAGGGAGACGGCATCAAGTGTATCG
Seq A exon
GTGAGTGACCTGTGTGTGTGTGTGTGTGTGTTGTTTTCTTGATGTGTAAAAAAATCTTAACACAACTCTGATTCGATTCTGAGAGTCACGATTCAATTCCAAATCGATTCTCTGCCTAATTTATTTCCAGATTTCCTTCAGCCGTCCAAACACACCAGCACCATCACCACCTAATTTGAATACAGGATAGACTCTGAACTTTTAAGAATCGATTCAGAATCGCTAGTAAAAGAATCGTGATGTGTCAATGAATCACTTGTTTTCCTAGTTTGTTTGTGGTTCCCCTGATGTTCTCTGAGCTCATATGTGTGTGTGTTATTCCGCAG
Seq C2 exon
ATGTTGACGAGTGTGTGACAGAGGAGCACAACTGTAACCCGAACGCTGAGTGTTTGAACACACCAGGCTCGTACCGCTGCTCCTGTAAAGAAGGATTCAATGGAGATGGATTCTCCTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237:ENSDART00000167748:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACGAGTGTGAAATCGGG
R:
TCCATCTCCATTGAATCCTTCTT
Band lengths:
231-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]