DreINT0012055 @ danRer10
Intron Retention
Gene
ENSDARG00000101928 | GORASP1 (2 of 2)
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr24:41171184-41173307:+
Coord C1 exon
chr24:41171184-41171288
Coord A exon
chr24:41171289-41172888
Coord C2 exon
chr24:41172889-41173307
Length
1600 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGC
5' ss Score
4.41
3' ss Seq
CATTACTTCCTCATCTGCAGGCA
3' ss Score
8.93
Exon sequences
Seq C1 exon
CGTTGGCTCTCTCTGAATGTTTAGATTCATCTACTTCCCTTCTAGACGCCTCTACTTCGTCTCTGAAAGCTGATGATGATGATGAGGAGGAGGAGTCTGCTATTA
Seq A exon
GTAAGCATCCGATTAGCTTTAAAGATTAAATATTCTGGCTCTTTTTACAAGATGTACAATGCGTCTCTGATGTGTCTGGAGTGTCTAGTGAAGTTTGACATGCAGATAATGTTTTCTCTCTGAAACTGACCCTTTTAGGCTTTGATGACAGTCGCTGTTCATTTGTGCTTCATCTAAAACTCCACATCTATAATCCTCTTAGTCTATGCCAAGTGTGCCGCAAGCCTACGTTTGAGTGAAGGTTTCGGCCGTTAGATCGCCCCCTGGGGGCTGGCTGCAGTACAAGTCATAAAGCCCGCCTCCTCCGTGTTAATGAAGGAGACTTGAGCCCAAATAAAAAAAAATATTACACTTGCAATAAAATGTCCCGAAAGATAGTTCTGGTGGATTAAGGCACTGGTTATTTTGCTGAAATAGGTGCAGATCTTCATTTTTGTAAACAGTTTGTTTTTAGCAGTAATTTAATGCTGGGCGTGTCATCGTGATTGACAGCTGTGATTGACAGTTTCTCAAAGCAGCGCGTCTGAGCTTCGGCAGGAGACTGAAGTAGACTGAAATGTTATTATTCGATTTCTGTGTTATTTTACCATGACAAAATGAGTTCAGCAGTAAACTATAGTTTCTGACATACATGATCCTGGGGGAACACTGTTTATTCGCTAAGTTCAGGGCTTTTTTCGGGCTTTATTAGTTTGCTGATACACGCCTAGCCACCCAGATAGCAAAACACAGTTCCGGCTAGATTCTCGCCTGCCGGAGACTTATCTCTTAGAGCTCAGACTGACTAACGTTACCTCTGCTGGACCTACTCCGGATGCCTGGACTCACTACCCAATTCCAGCCCGAGTCAATCGAGCTAGATGCGGCGGCCGAGCGAGCAGGCGCTGCCGCATGCGAGCCGGAATCAGCCCGCGACGCCGCGAGTAAGTTATGCGCTGCGGCCCGGAGCTGGCGCGATTGAATATATAAAACCCTCATATTTGTTAACGTTATTACATCCATTTGTGTTGATATGGCAGCAAACGCATGCTGAGAAGTTCGGGGGGCGTAGTTGATTTTACATAAAGCGTTTGGTTGGAAGCTCGACTCTGCTCATTTTCGCGGCTCCTCCTCTGGCTCCATCAGACAATCCTTCTGCGCATGTCTGGCTCCAATTTCAGCAGTCTTTTGCGACAGTTTGTGCCCGTCAAGCAGGCGTTTTGCCCTCAAGGCGTTCAATGGGAAAAAGGGCTGTCGCGTCGTCCATATTTTTTACAGTCATTGGTCTATGCTGACGTTATCTTCAGCAGCTCAAACACTCTAATGGCTAATGGACAGACGGCTGCTTCTCACTCAGGGCTGCTGTTTATGCTAATGAGATGGAGAGAAGGGCACTAGTGGGCGGGGCTTGCCCCCTATGATGACACGTACAAATGGAGAATGTCAATCAAAGTGTTTCTGCATCAAGTCTGATTAGAACAAACACAATTAATTAATGTTGACCATTAGAGGCTGGAGATACTCACACACTGCTGACACACAACTGTGCTTAAACCCCTTATAGAAGTGATTATTTTAAGCAGACTCCTCCGCTAACGCTGCATTACTTCCTCATCTGCAG
Seq C2 exon
GCAGTCCTAAGATCAGCTCATCAGTCCTGCTGGAGGATTCAGGCATCTGTGAGTCTCAAACATCTCCTGCAATCATAAATACAACACCAAAGCATGACCAGACTGTCAAATGTACACAGAAAACACTCGCATAATCATGTGCTGTGCCTCAGGTGTGTGTGTGTGTTCTCAGGGTTTCTTTCACAGAAATAGTTCAGCTGCTTGAAATGTTTCACCTGTGGAATAGTATAATATGTATAGATGAAGCTTTAAATGTACTGTATATATAAGTATATACTGCTGTTGCTGCATGTGGGATTACTCTGGGATTATAGCACCACATTGTGTGTACAAGTGTGTATTTCTGCTTTACAGAATATTGCCTTCATCTAATTGTGAATATATGACTATATAGACAATAAAACCATATTCCACCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101928:ENSDART00000161351:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCTCTACTTCGTCTCTGA
R:
CCACATGCAGCAACAGCAGTA
Band lengths:
355-1955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]