DreINT0013901 @ danRer10
Intron Retention
Gene
ENSDARG00000099137 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:49023318-49025212:-
Coord C1 exon
chr18:49025158-49025212
Coord A exon
chr18:49023444-49025157
Coord C2 exon
chr18:49023318-49023443
Length
1714 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGA
5' ss Score
5.84
3' ss Seq
CGTGTGTGTTTGTGTTGCAGACG
3' ss Score
11.1
Exon sequences
Seq C1 exon
TGCGTGGCGTCGTGTGAGCCCGGTTATCAGATCACCAGCACTGCAGAGTGCGTGG
Seq A exon
GTACGAGGAATCATACATCAATACCTACAGCTGTGGCCAGACATCATGCAAGAAATTAATATTGAGATTTTCAAAATGCATCACTGTTCTCTCTTGAATAGATTCTGACTTTAGTTTTAATAGCAGAAGGTTCTCTAGGCTAATTTTGACAGCAGACAGCACTCTAGGCTAGTGTTTAGAGTGCCTTCTGCTGTTAAAACTTTGCCTAGTGCGCCACCTGCTGTTAAAATTAGCCTAGAGCGCCTTCTGCTATTAAAAACTTGCCTAGAGCGACATTAGCTTTAAAATCTAGACACAATCTGTTGTTAAAATCTAGCCTAGAGCACCATGTGCTGTTTAAAACTAGCACAGAGTGCCATCTGCTGTAAAAACTTCATTTGTAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTAAATGTAAACTAGCGATATCTGCTGTTAAAATCTATCATAGAGCTCTGTCTGCTGTTTAAAATTAGCCTAGTGTCATCTGCAGTAAAACTAGTGCTATCTGCTGTTAATATCTAGCCTAGAGCATCAGCTGCTGTTAAAAATTAGCCTAGAACACCATCTGCTGTTTAAATCTAACGTAGAGCTCTGTCTGCTGTTTAAAACTAGCCTAGAGCGCCATCTGCTGTTTAAATCTACCGTAGAGCTCCGTCTGCTGCAAAAACTAGTGTTACTGCAGTTAAAATTTAGCCTAGAGTGCCAATTGCCTTTTAAAACTAGCCTAGAGCACCATCTGCTGTTTAAAACCATCCTAGAGCACCATCTGCTGTTTAAAATTAGCCTAGAGCTCCGTCTGCTGTTTAAATCTAACCCAGAGCGACATCTGCTGTAAAAACTAGCGCTATCTGCTGTCCTAGAGCTCCATATGCTGTTTAAAATTAGCCTAAAGCACCATCTGCTGCTTAAATCTAGCCTAGAGCACCATCTGCTGCAAAAACTAGTGCTATCTGCTGTTAAAATCTAGCCTAGAGCGACATCTGCTGCAAAAACTAGTGCCATCTGCAGTTTAAAACTAGCCTAGAGCGACATCTGCTGTTAAAACTGCTGTAAAACCTTATCTGAGAGCAGTGTCATTTGTTAAAAAACTAGCTTAGAGCGACATACTAGTATAAACTAGCACCATCTACTGTTAAATTCTAGTCTAGAGCTCTGTCTGTTTTTAAACACTAGTCTAGAGCGGCATCTGCTGTTTAAAACTAGCCTAGATTGACATCTACTGTTAAAACACTAGCCTAGAGTGCCATCTGCTGTAAAAAACTAGCCTAGCTTGCTATCTACTGTTAAAACACTAGCCTAGATCGCCATTTGCGGTTAAAAATTAGCCTAGCACTCTGTCTACTGTAAAAAAAAACACTAACCTAGAGCGCCATCTGCAGTTAAAATATATTCTAGAGCACCATCTTGCTGTTAAACACTAGCCTAGACTGCCGTCTGCTTTTGAAAACTAGTCTAGAGCGCCGTCTGCTGTTAAAACGTAGCCTAAAGCTCCATCTGCTGTTTAAAACTAGGCTAGCTAGGCTAGCTAAGGTTGAAAAGCTAAGCTCAGTATCTACTCAAGAGAGAGCAGCGTTGCTTTTGAAATATCTCAGAATGGATGCTGGATCAGTTTCTCCAACAGTTGTTGACCACAGCTTTAATATTAGCAGCGGGAGTCAGTCAGGGATGTGCAGAATGACCGTGTGTGTTTGTGTTGCAG
Seq C2 exon
ACGTGAACGAGTGTGCCAACGAGACGGTGTGTGGAGCTCATGCCTTCTGCCAGAACCTCATCGGCACCTACCACTGTCTGTGCGACCAGGGTTACGAGTCCACCGGAGATGGCAAGATCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099137:ENSDART00000160702:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(38.1=84.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]