DreINT0014765 @ danRer10
Intron Retention
Gene
ENSDARG00000079124 | MTERF4
Description
mitochondrial transcription termination factor 4 [Source:HGNC Symbol;Acc:HGNC:28785]
Coordinates
chr2:44692914-44698064:+
Coord C1 exon
chr2:44692914-44692990
Coord A exon
chr2:44692991-44697682
Coord C2 exon
chr2:44697683-44698064
Length
4692 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTTTCTCTCTGTGTTGTCAGATG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAGCTCTGGCTGTTGTTGCGGGGTCGGTCGTGTTTTGACGCAGCACAGCTATGGGTTCACATGTATGCAGAAAACAG
Seq A exon
GTACAGTCTAAGGGATAAAATAAATGTTTTACATCTATTAAGATTCTTGAACGCTAAATTTGGACCTTCAATTGCAGAATTTGTCATTAATATATCGCGTTTATGTTGGTTAGACGCGGATTTTTGTCTGTCGTTCACTGACTGGAACCGGGGTTGCATTTATTTGCGATAAATCGAGTTGGAGAAATGGCGTTAACTTTTATTTTAAGGGCTCTTGGTTATTGGCAAAACAAATACAAATGTCATTACGTTTAATTAATTTTTAAAGTTGTCTCATTGTTTTGATGTACAATGTGACCTTCATTCAAACTTGATCAAACACATGTGTAGCTAATATTTACAAAAACATTTTGCCCGACTGAAGCTAAAATCGTCCATAGCCTCTAAAATTAATCAATTATACACGACATGTAGTTTGTGTCGTGTTTTAGTGTTTTATCTGAGTAGGAAATAACGTTAAACACTATCATACATTTTCAGCACGAATTTCAGAAGACGCCACTAAGCGCCTTTCGGTCGTTTGCAGTGGGCTCTATACGGAAAAATAAAATCATTTAGGGTCATGTAATGGCATTAAAATACTCACTTGTATGTTATTTTAAATCTAAATACTTAAGGTATCTTTAAAAACTCTTAAAATACAATCAAATTTAGTAAAAAAAAAAAGATATTTGGCAACGTTAAGTAGCTATAGTTCAGAATAATGTTGTTTTGTTGTACGAATATTGTTCTGATATTGTTGTATACGAGCCATTCCATGCAAATGTCAAACTTGCCATGATAAAAAATGTTTTCAACAAAATAGAGAAACCGTTTCTACCGTTTCTATGCAAGTACTTTGAAAAAAGCTCAAAATGTCTCTTTCCGTGTTTTCAAACAATTATATTTCATTAAACATGGTCATACAAGTGCCAATTTCATATCGGTCACATCCATAACGTAAAAGTGTCACATCCATAATGATGTCACATTCATAACTTTTCCCTCAAACGCCTCAAATATATATATTTTATAGAGGGCAAACATCTTTTGATTGGCATAATTTCTTTTGAGATGTGCAGATTAATTCAAAGAATTTCTAAAAAGTATGTTGTATACTGTAAACTGGCAAACTTTTTTGACTCATCCATATGACATGATTATTTTCCTCATATAAAAAATAAAAAATTAATGCAGATTGATATTTTTTTCATTCCATAACTCTGTGGTTTGTTGTTTTGGAAAATATAAACAGTTGCTTCAATATAACATTAACGTTAACCTATACTTTGTGAATTCATGATTTGAGTTTTTATTTTTTATTGCTCCTACGTGATATGTGTGTTTTATATGTGATATAGTTATATATTTACTAAAGACTGAGGCCTTCATCATGCCACAAAATATCAGTAACTATTTTAAAAGTCAAATCGCACACAAATCAGCTGTGTTTTTTAAGTTACTTCCTGCTATCAACATATAGACTGGATACACACACTAAAATAAATCCTCTTTACAGAAGCGGCAAAAAAAAAAAAAACTACACATATGTACAAACCCTGTCTTTGTCCTCAGCCCAATTGAACCTACAGCTTTAATACAGTGCATCCTGAAAGTATTCATAGCACTTCACTTTTTCCACATTTGTTTATGTTACAACCTCAATGACTGTAAAATATATGGACGACGCGACAGCCCTTTTTCCCATTGAACGCCTTGAGGGCAAAACGCCTGCTTGACGGGCACAAACTGTCGCAAAAGACTGCTGAAATTGGAGCCAGACATGCGCAGAAGGATTGTCTGATGGAGCCAGAGGAGGAGCCGCGAAAATGAGCAGAGTCGAGCTTCCAATCAAACGCTTTATGTAAAATCAACTACGCCCCCCGAACTTCTCAGCATGCGTTTGCTGTCATATCAACACAAATGGATGTAATAACGTTAACAAATATGAGGGTTTTATATATTCAATCGCGCCAGCTCCAGGCCGCAGCGCATAACTTACTCGCGGCGTCGCGGGCTGATTCCGGCTCGCATGCGGCAGCGCCTGCTCGCTCGGCCGCCGCATCTGGCTCGATTGACTCGGGCTGGAATCGGGTAGTGAGTCCAGGCATCCGGAGTAGGTCCAGCAGAGGTAACATTAGTCAGTCTGAGCTCTAAGAGATAAGTCTCCGGCAGGCGAGAATCTAGCCGGAACTGTGTTTTGCTATCTGGGTGGCTAGGCGTGTATCAGCAAATTAATAAAGCCCGAAAAAAGCCCTGAACTTAGCGAATAAACAGTGTTCCACCAGGATCATGTATGTCAGAAACTATAGTTTACTGCTGAACTCATTTTGTCATGGTAAAATAACACAGAAATCGAATAATAACATTTCAGTCTCCTGCCGAAGCTCAGACGCCGCGCTTTGAGAAACTGTCAATCACAGCTGTCAATCACGATGACACGCCCAGCATTAAATTACTGCTAAAAACAAACTGTTTACAAAAATGAAGATCTGCACCTATTTCAGCACAATAACCAGTGCCTTAATCGACCAGAACTATCTTTCGGGACATTTTATTGCAAGTGTAATATTTTTTTTTATTTGGGCTCAAGTCTCCTTCATTAACACGGAGGAGGCGGGCTTTATGACTTGTACTGCAGCCAGCCCCCAGGGGGCGATCTAACGGCCGAAACCTTCACTCAAACGTAGGCTTGCGGCACACTTGTACAACCTTATTCCAAAATAGATTTCCTCAAGATTCTACACACAATACTCTATAATGACAATGTGGAATAAAGAGATTTTTTTGAAATTGTTGCAAATTTATAAAAAAAAACCCTGAAAAATCATATGTACATTAGCATTCACAGCCTTTGCTGTGAAGCTCTGAATTGAGCTCAGGTATATTCTGTTTCCACGAATCATTCTTGAGACGTTTCAGCAGCTTAATTGGAGTTCACCTGTGGTAAATTCAGTTGATTGGACATGATTTGAAAAGGCATACACCTGTCTAAATAAGGTCCCAGGGTTGACAGTGCATGTCAAAGCACAAATCAAGCATGAAGACAAAGGAATTGTCTGTAGACCTCCGAGATAGGATTGTCTCGGCACAAGGCTGGGAAAGGTTACAGAAAAATTTCTGCTGCTCTAAAAGTTCCATTGAGCACAGTGGCCTCCACAGTGGCTTCTCCGTAAGTGGAAGATATTTGGAACCACCAGGACTCTTTCTAGAGCTGGGCGGCCATCTAAAGCTGAGTGATCGGGGGAGAAGGGCCTTGGTCAGGGAGGTGATCAATAACCCAATGGTCACACTGTGTGAGTTCCAGTGTTCTTCTGTGGAGAGAGGAGAAATTCACAGAAGGACAACCATCTGTGCAGCAATTCACCAATCAGGCATATATGATAGAGTGGCCAGATGGAAGCCACCCCCCACCTGGAATTTGCATTTGAAGGACTCTCAAACCATAAAAAAATAAATTCTCTGGTCTGTTGAGACTAAAATTAAACGCTGTGGATTAAATGCCAGGCGTTGCATTTGGAAAAAACCAGGCACCGCTCATCACCAGGCTAATACCATGCCTACAGTGAAGCATGGCGGTCACAGCATCATGCTGTGGGGATGTTTTTCAGCAACAGGAACTGGAAGACTAGTCAGGATAGAGGGAAAGATGAATGCAGCAATGTACAGAGACATCCTGAATGAAAACCTGCTTCAGAGTGCTCTTAACCTCAGACTGGGGTGATGGTTCATCTTCCAGCAGGACAATGACCCAAAGCACACCGCCAAAATATCAATGGTGTGTCTTCACAACTACTCGATGAAGTCCTTGAGTGGCCCAGCCAGAGCCCAGATCCAAATTTTATTGAACATCTCTGGACACATCTGAAAATGTCTGTACACCGTCGCTTCCCATCTAACCTAATATAGCTTGAGAGGTACTGCAAAGAGGAATGGGCAAAAATTCCCAAAGACCGGTGTGCCAAGCTTGTAGCATCATATTCAAAGAGACTTGAGGCTGTAATTTTTTTTTGTAACCAAAGGTGCATCAACAGTATTGAGCAAAGGCTGTGAAAACTGATGTACATGTGATTTTTCAGGGTTTTTATTTTTAATAAATTTGCAACAATTTCAACAAATCTTTTTTCACATTGTCATTATGGGGTATTGTGTGTAAAATTTTGAGGAAATACATGAATTGAATCCATTTAAGAATAAGGCTGTAACATAAACAAATGTGGAAAATTTGAAGCGCTATGAATACTTTCCGGATGCACTGTAGTTTTGTTATGCTAAAAACTGTTATTTAGAAGAAGAAAAAATACTTCAGAAATAGCAAGTTTAAGTTGTTATGATTGACATCAATTAATTAAAACATGAAATTATAAATACATTCTACAAATAAATACAATTTTACAATTGTCCCCATGTTTCTGTCAGTCCTGTCACATTTGCATTAAATCTATCCTAAAATGTGTGTAATACACCTTTAAGACTATGACTCAAACAAAGTGACATCATTTGATGGAGGAGAAGCTGACTATGATCAAGGATGAGTTCTATCATTGAATTGTATGATTTTATGCTTGATTTTGTATGATCTTTTGAAGACGACAAGCTTAAAGGTCAGGCCCTCTCACATTTTTTATAAGTGACAATGTACGTTTCTGGTAGAATGTCCCATCCATATATATATGGAAATGAACAACATTTGCTTTCTCTCTGTGTTGTCAG
Seq C2 exon
ATGGTGCGATGGCTGTGGAGATGGAGTGCATGTCCTGTGGTGATGAACAGAGGTCATATGCCGTTCTGCTCCACACAGCAAGAGCCCCGTCATCTGAATTCGTCCCACAGCAGTCAGATGCCCCACAGCCCTGTGAATCAGCTCACCTTATGTTCTTTACTCCAGATGGGCTTCTCACAGACTCAAGCCGAGGAGATGCATGAAGCAGCCCTGAAGAGCCGCGGCAAACATGTACCTTCAGTTCTCACAGCGCTCTTCGTCCTGGGCTTCAATCCCTCCAGCGTGCTGAAAATACTGCAGAAGTGTCCTGAGGTGTATTCGGCTAAAGGTGAAGAGCTGCAGCAGCGCATCCTTAATCTGAGGAAGATGGGATTGGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079124:ENSDART00000155362:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF025369=mTERF=PU(39.0=64.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]