DreINT0016114 @ danRer10
Intron Retention
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47458808-47459466:-
Coord C1 exon
chr15:47459266-47459466
Coord A exon
chr15:47458879-47459265
Coord C2 exon
chr15:47458808-47458878
Length
387 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGAG
5' ss Score
1
3' ss Seq
TCTCTCTCTCTCTCCTACAGGCT
3' ss Score
13.26
Exon sequences
Seq C1 exon
TCTCTGCTGTACAAGCGAGTGCACGAGGCTCAGTTCCGCAGTCATCTGGCCAATGAGATGATGATGTACCACATGAAGGTGTCGGAGGAGGAGGTCAGCAAACTCCTGACCATCGGCATCGAGTCCGTGCAGAAAATACACGCCAACTTCGCTGAGTTCACATACACACCACGCTCCCTGCCGGACGACAACACACCAATG
Seq A exon
GTAGAGTACACAAAACACACACGCACACACACACACTCATGCCGACATATTCACATGTACAGAGATGGACATATGCACACACAAACACAGATGCAGATGACACACACACACACACACACACAAACACTCACACACACACACATCATTACACAAACATACATTCTCACAAGCACTCACACAAAAATAAACTCACAAGCACACACTTACACAGACGTTGGCTTTTATATTCATGCACACACAAATACACACATGCACACACACTGACACAGACATTTGCTCTCATATGCATGCACACGCAAATATGTATGTGCAAATACACACACACACACACACACACACACACACACACACTAACTCTCTCTCTCTCTCTCTCTCTCTCTCCTACAG
Seq C2 exon
GCTGTTCTAAGCATGTTTGAAGATATGGGTTTCATAAACACCTACAAGATCGACCTGCACACATTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064:ENSDART00000111880:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACAAGCGAGTGCACGAG
R:
GGCTAATGTGTGCAGGTCGAT
Band lengths:
264-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]