DreINT0016161 @ danRer10
Intron Retention
Gene
ENSDARG00000056806 | PDE5A (2 of 2)
Description
phosphodiesterase 5A, cGMP-specific [Source:HGNC Symbol;Acc:HGNC:8784]
Coordinates
chr1:13571793-13573364:-
Coord C1 exon
chr1:13573277-13573364
Coord A exon
chr1:13571894-13573276
Coord C2 exon
chr1:13571793-13571893
Length
1383 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
3' ss Seq
ATCTCGCTCTTCTCTCTCAGGGC
3' ss Score
10.72
Exon sequences
Seq C1 exon
GAGTAACCAGCCTCTGGCACAACTGTATGGTCAATCCTCCCTCGAGCACCATCATTATGACATGTGCCTTCTCATTCTTAACAACCCT
Seq A exon
GTAAGATCATGTAGCATAAATTAATCCATCCATCCATCCATCCATCCATCATTCCATCCATCTCAATCCTCATATCTTGCTATCTTCATCCATCTACCCATGCATCCATCCCCCATCCATCCATCCATATGTTTATTAATTCATTCATTTGTTTCTCCATCTATGCATACCCTTTTGTTTGTCTGTTCTACCATTTCTCCATACATTCATTCATCCACTCTGATTTTTGTAAAAATGTCTATTCAGTTCATATTCTCCCCCCACCCATCAATCCATCCTTCCATCTGTTTGTCCATCAATTCCATCCTTTTAGTTGTTCATCCTTACATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCATCCAACTGTGATCCACTAATTGGTACATTTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATATATATATATATATATATATATATTCAATTTTCTGTCCATCTGTTTGTCAATTCATGCATTAGTTTTCCATTCATCTATGCAATCATCCAACAATCCATTTGTCTATTGACCTATTATCAACTATTCATCCATTTGTCCATCCATCCATCCATCCATCATATCTTATTATCTTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTTGTTAATCCATTCACTTGTTTCTCCATCTACGTTTACACCTTTTGTTTGTCCATTATTCCATTTATCTATCCATCCATCCATCCATCCATCCCTCCATCCATCCATCCCTCCATCCATCCTTCTATATATTTGCTCATCTATCCATCCATTCATTCATCCACTCAGATTTTTGTAAAAAACATCTATACATATTCTATTCATTCATTCATTCATTCATTCATTCATCCATCCATCCATCCATCCATCCCTCCATCCATTCTTTTTTAATCCATTCACTTGTTTCTCCATCTACGTTTACACATTTTGTTTGTCCATTCTTCCATTTATCTATCCATCCCTCCATCCATCCTTCTATATATTTGTTCATCTATCCAATTATTCATTCATCCACTTAGATTTTTGTAAAAAACATCTATACATATTCTATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATCCATCCATCCATCCATCCAATACTTTTGTCCTTACATCTATAATTCTCTTTATTCATATATTGACGTCCATGCGCATCTGTTCCATATATATCTCGCTCTTCTCTCTCAG
Seq C2 exon
GGCAGTCAGATTCTCAGTTCACTCTCAGTAAACGAATACATGGCCTGTTTGCAGATGATTGAGAAGAACATTCTGGCAACAGACCTTGCCATTTTTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056806:ENSDART00000079359:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.0=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]