DreINT0016709 @ danRer10
Intron Retention
Gene
ENSDARG00000079438 | PKP3 (2 of 2)
Description
plakophilin 3 [Source:HGNC Symbol;Acc:HGNC:9025]
Coordinates
chr7:32678779-32681725:-
Coord C1 exon
chr7:32681521-32681725
Coord A exon
chr7:32678954-32681520
Coord C2 exon
chr7:32678779-32678953
Length
2567 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
AAACTTATTCCCTTCTGTAGGTA
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTGCGGAGTTTAAAGGGCATCTCAGCCCTGGTGCAGCTGTTCAGCAGTGAGAACCAGGAGGTGCAGCGCTACGCTACAGGTGCTACACGCAACCTCATCTATGAGAATATGGACAACAAAACAGCCCTTATTGAAGCCGGCGGCATTAGCAAACTCATTGGTGCTTTAAGAGAACCAGATGATGAACTACGCAAAAATATCACAG
Seq A exon
GTACGTCTGACTGACTGGTTGATTTTTCTTCAGAGGAGTGGAAATAATTTGGACTATGAACTTGAATTTGGAAATACAGAGTGGCACTTGTATCTTAGCCAGAAGTCAAGCGTATTTATTAGTAGATCAGTATTGATTCAGTACAAAAGTCCACCTACAACTGCTTGGATTGAGGACTGTTGGTGCAAACAGGTGGAGAGTTAAGTAGAGCAGTGAGTGCATTCAGAGTCAGAGCGAGAGCAGAGAAGAAAGGGAAAAGTAGTCTGGCCGTTAGCTGGATTCACTCCAAGTCTCAGATGCAGTGGGAAGGAGACTCCCAGAAGCCTTTGTGCTTTGTGAGCTCTGCTATCACCCCCACCCGCTCATGCTCTCACTCACTTAGTAAACAATCCTTGACATTCTTTCCTGCTGGACTCTGGGTTGCCAGGTCTCTCAGTGACGTTTTATGATCTGTCATGAGTTTACAGCTTTGCAATACACTTTGTGTCACTCTGTGTACTGAACTTCAGCATACTAAAGAGCACTAAGAAGACTAAAAGTTGGGATTTATCCTTTTTATTTATAACTTTTTTTACTGTTTGTGTTATTTATATTATATACAGTGTCAATTACATTTGAAATTTTACATTTGAATACTTTGACTAAGCAGTTTTGTGTTAGTACAATCATCCCTGCATGTCACTTAATCTATTTTTAATGAACATGAACTAAAAATATTTACTTTTTTTAAAGGCATCATATAATAAAAATCTGAATATAGCTAGGTATAGCTAGCTGAATAGTTATAAAAGTACATAGAAGTGACATACCATAATGCTCAAACACCATTTTTTCTTCGTTCTTAAGCACAAACTGTGAATCTAAAATCCTGGTAGCCTATTGGAAAAAAAAACACTGACTCTGATGACGATGATCTACACAGAGTGACAATTATAAATGTCCTAGGCTGTGTTTGGTTGGCTACAACGTTTCCTAGTGAGGTTACAACAATGATACTTTCTCCCCCTTATTTTTAAGTTTATCTATGCTTGTATTATATCTACTATGTATGTGGGACTCTTATTTTGAAAACAGGACAGACTATAAGGAAGCAGGCTGTCATTCATGACCATCTAGTCTCATTCGTTCACAGCAAAATGTGGGATATACAGATCATAAATTTACTCAATCCCTCCCCGAAGAGGCATACTTTTGTTAGTTTATTGTGTATAGTGCGAAATTTGCAGCGTATGTTTGTAATGAAGCAACAAACACTGCAAGTAACTGCTGAATCTATGCGTTTAATGCAAGTTTATATTCATATTGCTCAGTTTACTGTGACTTTTCTGGAGACAGGGTGCTAATAAACTTCAAAGACCCATCTATTTATGCAGAGGCTGATATTGATTCATGACTTTGTTTTTGTATATGTAAAAACTGCAAAATAAAACTGAAAGTACATCTCTGTCAGCTCATTTTGTCAAGTATAAATATAAATTAGCCTTTATTTCATCCACAACACAACTCAGGAGTTGAAAATGGACCTGTAAAGCCATTTCTGGAAAATGTATGCACTTACTTAAGCCACACACCATCTATTTAATTTAATATATTGCTTTAATGCATTGTATTGCACCTTTAACTAGTATGATTATTTAGGTCATAAGACCAACAGAGTTATTTAAGCAATATTATCCTGTAGGGGCATTTCTGCTAAAACAAGCTTTTTATTTTACATAGCTAAACTACTGTAACTTAGCTTGGGTTCATTTAGTTTTCTTCAGTGTAAATGGAAGAAATTCACACAAATATTTTTTATCAAAGCGATAATTATGGAAAAATCAAGTTTTTGTGATGCAACACATACAGTTGAATTATCTGAATTATTATACCCCCTTTGAATTTTTTCCCAATATATTTAATAAATATTTCCCAAACAATGTTTAACAGAGCAAGGAAATGTTCACAGTATGTTTAACAATATTTTATCTTCCGTAGAAAGTCTTATTTGTTTTATTTCTGCTAGAATAAAAGCACTTTTAACGTTTATAAGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATTTTTTTAATAGTTCTTTCTTCTCTGTCTTTAAATATTACAACTTCTTAAATATAAAAAACATAAAAAATGACTTCATTTGTCTTCTGGGAAGTGATCGAATCATTGCATCATTGTTTGCATTGCTGTGTGAGCGACAGGTTGTCCTGCCCTTGTGCAGCTAAACACAAGAATTAAATAATTCAAATAATAATATAAAAATAATTGTAATTTTATTATATAAATTTTTAAATATAATTAATATAATAATTTATTTTAAGTAATAGTATAATAATAATAATAAAAATGGGTGCACATAAATCATTTATATAAAGAAATGGAACTTTCAAAATAAAAATTATCAGTTTGGATTTTTATGGTGACTTCAAAAACCATCCATCAGGATTTACAAATGTAAATGGTATTCATAAGCAAAAAGCTAAACTTATTCCCTTCTGTAG
Seq C2 exon
GTATTTTGTGGAACCTATCATCTAAAGATAGTCTGAAGGAGAGGTTGGCCAGAGAGAGTTTGGCTGAGCTGACAGAGAGAGTGCTGGTGCCTCTGTCTGGAGGAGGAGATGCTGGAGTCATTCAACAGAGCGCGTCTGAGGCTGATATATTCTTCAACACCACAGGCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079438:ENSDART00000113744:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(80.5=47.8),PF0051418=Arm=PU(80.5=47.8),PF040639=DUF383=PU(5.6=23.2)
A:
NA
C2:
PF0051418=Arm=PD(17.1=11.9),PF040639=DUF383=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]