DreINT0017635 @ danRer10
Intron Retention
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8728025-8730698:-
Coord C1 exon
chr10:8730606-8730698
Coord A exon
chr10:8728136-8730605
Coord C2 exon
chr10:8728025-8728135
Length
2470 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
3' ss Seq
ACTCTCTCTCTACTCTCTAGAGA
3' ss Score
7.87
Exon sequences
Seq C1 exon
ATCAGCCAGAAGAAGCTGAAGAAGTACGAGAAGGAATATCACACCATTCGCGAGCAGCAAGAACAGCAGGAGGCGCCGATCGAGAGATATGAG
Seq A exon
GTAGATTTTAACCTTCATTCGTCTGTGCATCTCTGCCGGGAGTTACACATCTGCATTCATAACTGCGTGCATATGAATATTTACATGATCCATTTGGGTGTGCGTGCGTTTGCTCATATGCGTTTAATCTCGGCCGAGATTTGGTTCTCCCTCTCAATCAGAGCTGGTTTTCTACTCTGCGTCGAGCTAAAACTCATCTTCCGCCATCCCCATCCTGTATCTGGTGCTATTAGCATATGCGCTTTGTGCTTATAATGAGCAGCGATGTGAGACGAGGTCACCGCTGGGCTCAGAGATGATGCAAAAAGGGCCAGATGGATTTCTGATATCAGCTTCCTGCCAGTCAACTGTTAGACTGAGATCCGCGCATGAGGAATTACTGTGATCATTTGTACCTGTCCGTCAGGGTTGGAAATTTACACACACACACACACACACACACAGAGCACATTTCACACATTAAAAGAGCAGTACAGTTTACTGAAAATACAATGCTGTTAGAAGTTTGCAGGATCACAAATAAAGCCATAAATCAAAGTACATTGGAAATAGTTTGCTGGAGAGTAAACTTTAAAATTGTACTTTGAATCACAACTTTTTGTGTTATGCCATAAATCAGGTGCTTTCATGGTTTTAAAGTTAAAAAGATACCTTGAAGAGTAATTCTTTAAAAAAATTTAATGAATCTGACAAAGAATAGATGAGTTATTAAAGTAAACTAAATCTGCATAATGCCAAATTGTAATGCAATAAAAAGTGTGTGTTTCTGAAGCAGTTGTGCAATTTCAGTGAAGTTCAAATGCAATAGAGTTAGCAATGATATTAACAGTGACAAAATGATTAACAAAACAGAGCTAAACAATACATGACCGCTTTGCCAAGACTAACAACATAGTTGTTATTTAAAGGTACAGTTAACAATAAAATAAAATAAAATAAAACTGTAAATTACTTACTCTTTACTTGTTTCAAACCTTTATGAGTTTCTTATTTCTGTTTTACACAAAAGAATATACAGGGCTCGGCCTATAAGAGTACACCCCTTACAAATCTCTCTTTTAAACTAATATTTACTATATGATTCTATATAGAAATTATTTTATATAATGTTAAAGTCAGAATTATTAGCCCCCCTTTAAATTGTTTTTCTTTTTTTAAATATTTCCCAAATTATGATTAACAGAGCAAGGAAATTTTCACAGTGAGTCTAATAATATTTTTTTCTTCTGGATAAAGTCTTATTTATTTTTTATTTTGCCTAGAATAAAAGCTTTTTTTTTTTTTACTTTTAAACACTATTTTAAGGACAAATTATTAGCCCCTTTAAGCTATATTTTTTGATAGTCTACAGAACAATCGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATTTAGTCAAATATTATTTACTGTCATCTTGGCAAAGATAAAATAAATCAGTTATTAGAAATAAGTTATTGAAACTGTTATCTTTAGAAATTTGTTGAAAAAGTATTCTCTAAAAAAGAGATTCTTTGACTATGTTTTGGATTATTGTCTTGCTGAAATGTCTACCCTGGATTCATCTTAATCATTCTGGTAATATAGACATTGTACTGAAACAGATAATATTAATTTACACTGATGAAGGGCAGGGGCTTGCTGAAGAACTATTCAGAGATGTCAGCTGCTGTCTGGGCATTCACTGCCTTTCTACATCTTTCTTTTTTTCATGTGTACTTCATGTGTACTTTTCCCCTGTGTCATATCACTGTATTACTCATAATTTCATTTGTAAACTAATTAATGTGGATCCCTTAGGTTATTACCAACGTCCTGCGAAAATTTCAATTCAACGACATCCTTAGAAATATTCTTTTTTCACATAGTTTTCTGAGAGGAATTGTGACTTGATCAATACTTATTTTCCCCACTGTATATCTGCTAAAGGGCATTTACATTAATTATTGTCTTATTTTTTTAAGTGTTGCCTAATATATATATATTAAATTGAATACCTGTAATTTCAATGTTAAATAACTATAAATAACTATCCAACAGTATGTTTATTATTAATAGTATTATAACTAATATCACTGTTAAATGCATTGCATTTGAACTCTGTCATTCCTTCACTGAATATGTAGAAATGCTTTAGAAGCACACATTTGCATTATTATTCATGTCATAAAAAACTCTCGCTTTTTAAAAGTGTCTCTTGATCTAACAGCCAGAGGACTGAAAGTCCAGTCAGTGGTATGTAAATTGCTTTCTGACATATTTCCCTTCAACTTGTCAATTTTTAATCAGGTTTCTTCTCCAAGGTTCCTTGTATTCCCAGCACAGTTAACCATTATAGTGACAGTCACAAGACATTGATGGAGTCACACGCTCACACTCTCTCTCTACTCTCTAG
Seq C2 exon
AGAGAAAACCGGCGGCTACAGGAAGCCAACATGCGACTGGAGCAGGAAAATGACGATTTGGCTCACGAGCTGGTCAGCAGTAAGATCGCCCTGAGGAAAGATCTGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967:ENSDART00000167821:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.351
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]