DreINT0018068 @ danRer10
Intron Retention
Gene
ENSDARG00000022185 | RGL3 (1 of 2)
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr3:13846774-13848907:+
Coord C1 exon
chr3:13846774-13846790
Coord A exon
chr3:13846791-13848622
Coord C2 exon
chr3:13848623-13848907
Length
1832 bp
Sequences
Splice sites
5' ss Seq
GATCCTCCA
5' ss Score
-35.77
3' ss Seq
ATTCTGACTTGAACTGTATGTTT
3' ss Score
-7.48
Exon sequences
Seq C1 exon
CTAGAACCGCCCTGGAT
Seq A exon
CCTCCAATCCTTTATGAGCTTCTTCGTTTTCTTGAACACAAGAAGGTTTTTTTGTGTGTGATTGTTAATATATTACAGAAGCAATGCCAGGGTTTGCATGAAAGGAAAATACATAAGAAATTAAATAAATAACAATAGACAGGAAAAGAAAAAAAAAACTCTGGGGTGAGCAGTGACCTTTATACACCTCTAATATCATATTATTTATCTTTCAGTACACTTTAGTTTATCTAGATATTATATGAGACATTTTCTCAATAAAATCAGACCATACTTTGATTCTTTGGGGTTTAGCTCTGTTAATTCTTGCTGTAGAATGTTCTAACAACACAATATTTTTTAGTTCAACAAGCCACATTTTAGGGCATCACGGTGAGGCAGTGGGTAGCACAATCGCCTCACAGCAAGAAGGTCGCTGGTTTGAGCCTCGGTTGGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCCGTGTTGGCATGGGTTTCCTCCGAGTGCTCTGGTTTTCTCCACAGTCCAAAGACATGCGGTCCAGGGGAATTGGGTAAGCTACATTGGCCGTAGTGTGTTTGTCTGAGTGTGTATGGATGTTTCCCAGTGATGGGTTGCAGCTGGAAGGGCATCCGCTGCGTAAAACATATGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCTGATTAATAAAAGGACTAAGTCGAAAAAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATGTTTAATAGTATCCTAGTACTGGGTTATGGCTGGAAGGGCGTCCACTGTGTAAAACATATGCTGGAATAGTTGGCGGTTCATTCTGCTGTGGCGTCCCCTGATTAATAAAGGGACTAAGCCGAAAAGAAAATGAATGAAACCACATTTTAAATATAACCTTCTTGGCTGCATTAGTTGCAGTATGAAATATCCTATGTTGGTACGTGCTTAAGTTAAGATCATAATTATCATTCAATAAACAGATATTGGGGTATTAAGGAATAAATGTATCTTAAAAGTCTGATATAATATGAAAGAACTTATCTCAACAGTATGTGTTAAGCCATGTAGATCAGTTTATAGTGTATAAGTTGATGGGCAGGATTCTTACACATCAACCTGGATACTTTCCTAAATCCAGCCTGATTTCAGTTTGTAAGGGGCCAGATCCTTTTCCCATGGTGTGAAGATAGGGAGTGCAGTGGAGAAGACGACTTTTTTTTGGAAGAAAACCTGTAACCACTGACTTCCATTGTATTTGTTTTTCTTATATGGATGTCAGCTTTTACAAGTGTTTAGCTTTCAAAATATCTTCTATTGTGTTCAACAGAAGAAAGAATCTCAGCTTTTTCTTTTTCAAATGATGATTAACAGAGCACAGAATTTTTCCACAGTATTTCCTATAACATTTGTTTTATTTCAGTCTTATTTGTTTTATTTCAGCTAGAATAAAATCAGTTTTTAATTTTTTTAAACCTTTTTTAAGGTCAATATTATTAGCCCCCTCAAGCAATATTATTTTCGATAGTCTACAGAACAAACCATCGTTATGCAATAACTTGACTAATTAACCTAACCTGCCTATAACCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTGTAGAAGTGTCTTGAAAAATATCTGGTAAAATATTATTTACTGTCATCATGGCAAATATAAAATAAATGAGTTATTAAAACTGTTATGTTTAGAAATGTGTTAAAAACCTTTTTGTTGGGGACAAGATAAACAGAGGGCCTATAAATTCAGCAGGGTTACTAATTCTGACTTGAACTGTATG
Seq C2 exon
TTTGGTACAGGAGCCTGTTCAGGAATGGGGTGAGGAGCATGAAGATGGGGCGGTGTTCGGGGTCACCCTGCGCAGAGAGCCAGTCCAGCAGTCTGCCGAGCCCACGGAGGCTTTCGTTCATTACCGCACATGTAAAGTGCGCAGGTTAAAAGCAGCCACGCTGGACAAACTGGTGTCCCACCTGCTGGACCCCTGCTGTCAGGAGCAGGACTACAGTTGCATTATGCTGTCCACGTATCGCTCCTTCACCAGCACCAACAAGCTCATCGAGACGCTCTTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022185:ENSDART00000001755:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(43.5=49.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]