DreINT0018758 @ danRer10
Intron Retention
Gene
ENSDARG00000089049 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr23:1102916-1104223:-
Coord C1 exon
chr23:1104018-1104223
Coord A exon
chr23:1102998-1104017
Coord C2 exon
chr23:1102916-1102997
Length
1020 bp
Sequences
Splice sites
5' ss Seq
ATCGTTCCA
5' ss Score
-21.2
3' ss Seq
TGTGTCGTTTGTTGATGAAGGGA
3' ss Score
4.14
Exon sequences
Seq C1 exon
CTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATTCATCTCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATCTATCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCGGCCATTCATCGTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCGGCCATTCATC
Seq A exon
GTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCTTTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCTTTCCATTCTTCCTTCCATCCATCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCTTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCTTTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCTTCCATCCTTCTTTCCCTCAGCCATTCATCTTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCTTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCTTTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCTTCCATCCTTCTTTACCTCAGCCATTCATCGTTCCATTTTTCCTTCCGTCCATCTTTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATCCATCTCTCTTTCCCTCAGCCATTCATCGTTCCATTCTTCCTTCCATCCATCTCTCGTCCCCTCATCCATTCATTTTTCCAAATATCTTTTTCTCAGTCATTCATCTTCCCATCTATCCCTCTTCCCCTCATCCATTCATCTTGCCATCTATCTCTTTCTCTCAGCCATTCATCTTTCCATTTTCCCCCTTCCCCTCATCCATTCATCTTGCCATCTATCTTTTTTTATGTCATTCATCTTTCCATCTATTCATCTTCCCCTCATCCATTCATCTTGCCATCAACCCCTCTTTGTCCTCAAATGGCAGATTTCTAAAAGTGTGTTTGTGTCGTTTGTTGATGAAG
Seq C2 exon
GGATGAGGCGTTGCTGAAGTATGCCATGCTAGCAGAAACTGGTCTTGGTGTGGCACAGCACAATGCTGCCCATCTGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089049:ENSDART00000128695:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTCAGCCATTCATCGTT
R:
CTCACACAGATGGGCAGCATT
Band lengths:
286-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]