DreINT0020487 @ danRer10
Intron Retention
Gene
ENSDARG00000013526 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr7:24062165-24062800:+
Coord C1 exon
chr7:24062165-24062335
Coord A exon
chr7:24062336-24062626
Coord C2 exon
chr7:24062627-24062800
Length
291 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GCCTCTGTGTTTATCTGTAGGTG
3' ss Score
11.71
Exon sequences
Seq C1 exon
ACTGCCCCCTGGTGGAGACTTCTGTTCCTCATCTGCTCTCATCCAGTAAAGCTGTGAGCCCAGGCTCTAAGGTGCAGTTCTCTTGTAGTCCCGGCTTCTATCTAGTGGGGGAGCCAGTGCAGCTGTGCTTAAACAGAGGCCAGTGGAGCCACGCAGAGCCAATATGTGAAC
Seq A exon
GTGAGTGATGCGATCATGCGAATCCTCAGATATGAAACAGTGGGCACACAATGACTGTTTAAACAATGACGCTTGTTATAAATGGAACCCACAGCTACATTTACAACTATATAATTACACTGTTCTGATGTGAAATCATACAGTTTTTATTCCAAATACAGATAAATCCTCATCACAAAATAATTTCACACACTGACATGCACTGCATATACAATGTAGATCTCACTTTATTTATTACCCAGAAGAAAGAATGTCATGAATCTAAACCGGGGCCTCTGTGTTTATCTGTAG
Seq C2 exon
GTGTGGAATGTGGTCCTCCACCTGACCTGGAGCATGGACAATATCATGGAGAGGATTTCTATGCTGGGAGCTCAGTGCTTTATCAATGCAAACCAGGTTTCTACTTGCTCGGGGAGAGTAAGATGCAGTGTACTAATAATGGTAAATGGATTGGCAACCCACCTGCTTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013526:ENSDART00000076882:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(94.8=94.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTAAAGCTGTGAGCCCAGG
R:
CAGGTGGGTTGCCAATCCATT
Band lengths:
293-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]