DreINT0021000 @ danRer10
Intron Retention
Gene
ENSDARG00000088795 | TGFBR3L
Description
transforming growth factor, beta receptor III-like [Source:HGNC Symbol;Acc:HGNC:44152]
Coordinates
chr3:5835523-5840101:-
Coord C1 exon
chr3:5839966-5840101
Coord A exon
chr3:5835612-5839965
Coord C2 exon
chr3:5835523-5835611
Length
4354 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTCAATTTACTTGTTAGTAT
3' ss Score
4.19
Exon sequences
Seq C1 exon
GCTGACCCAAAATTTTCTCACCCGATCAGAAGACACTGGTCGGCTTATGCTGGACTGCTCCATCCTCCAGCTGCGGGGGGTCTCGGATGTAAACCGGCGCATCTTTTAAGACTTTCAGGACTGAGGCTTGCTGCAG
Seq A exon
GTGAGTTTTTTGGCTGAACTATAGTTTTATTATTTAATATTTAAAATACACAAATAAAGTACGATTTAAAGTTAAAGAGTGAGATTTAAAGAGATATTTTAATCATCATTTGCTCAATTTGGTCACTCTTGTTTCAAACCAATGTGTGTGTGTTGTTTTTTTCCCTGTTGAACACGAAACGAAAGAAGATGTATTGTTTGAAGCCTGTAACCATTGACATCCATAGCAAAAACAAATAATGCAGAAATCAATACTTACAGGTTTTTTGCTAAATATCTTGTCTTTTTTTTCCAACAAAAAAGAAACTTAACATGGTTTGAAGCAAGTCAAGCGACAGTATTTTGTGGGTGTACTATTAGTTAATTGTGGTTTTCAGTTTTATTTATTTTTTGAAAAAATTCGTTTTGGAAGAAACTATAATTTTATTATTTAATTATTCGATAAAAACACAAATAAACTATGACACAAAATTAAAAAGTAAGATTTAAAGAGATATTTTCATCCATCATTTGCTTATTTTTGGTCACTTCGGTCACTTGTTTTGAACCATTTCCTACTCTCATGAACACAATAGAGGATATTTAGTTTGAAACCAGTAACCATTGACATCCATAGTTGGAAAATCTAATACTGTGGAAGACAATGTTTACAGGTTTCCTGCTAAATATCTTCCTTTGTTTGATTTAATCAAGGGAGAGTAAATGATGACAGAATTGTCATTTTTTTGGGGTGAACTATTTCTTTAATTATAGTTTTCAGTTTTATTTGTTTATTAAAATGTACTTGGAATTTTGAGCAAATTATAATAGTCAAATACATGACGTTATTATATATAACTTGAATAAATATTGCTGAATAGAATTGCTATTAAATGTTTTTATTGTGCCTGCATTTGTTTTTTGGTAATATATCTAATAAAAATCAGCTGCCCACATTAAAACACTAAAGTGAAGTGTAAAGGGTATTATGCTGTATATGTTAGAATATTTACTTATTTATTTAACTCTTTTTTAATGCATGCAGCAGCATGCTGTAGTATTAACTATAGTGAACTGATGAACTGTAACAAACACTTAGGTATACTTTAGTTTTTACTACAGTAAACTGTGGTGTATTGTAGTATTATAACTTCTACAGTTGTAAAATGTAATATGTAGGCCCACATAGACTCTGCGCACGCTGAAATCCGCAGATTCATTGAGTCTATGCATTGGCTTGTGTAAATGAGCGTAAATTTGTGCTTATTCAGTTTTAAATGAATTCCACTGATATTATTGTGATATAATAATAGTGATAATAAAATGTCTATATGAGTTATGTACAATACAGTTTGTAAAGTTATATGTTCTGTGTTTTAGTAGATATATTACATGAGAGACTTGCTTTGTTTATCAAATAAGTGAATCTAATAAGTTTTGCATTGTAAACATTAAATAAAAGTTTAAAATGTCATCATCATCCTTAGCGCAACATTCCATTACTGGATCCTGGCTGCCTCAAGTAATTTCCGCCAATGTTCTCTGTCCCGGGCAACTGCCCACCAATTCCTTATTTCTAAATCATTGGCGTCACTGCTAATGCAGTCTCGCCATCTTGGTTTAGGTCTTCCTACTTTTCTTTTGCCTACCGGGTCAGTGCTGAAGATTTTTTTTGGAATGGCATTTTGATCCATACATATGACGTGTCCTGCCCACCTTAGTCTCGCAAGTCTGATATATTTAACTATATCAATTTCCTTATGCAAGGCTGCAAGCTCATTGTTGTGACGTATCCTCCATTGATTATTGTCTTTTATTGGGCCATATATTCTCCTCAGAATTTTTCTTTCAAAAACTAAGAGCTTTTGTTCTATGGCTTTTGTCATTGTCCACGTTTCTGATCCATAGGCCAGGACTGGGCGAATCAGGACTTTATATCGGGTTATCTTTGTCTGTCTAGGCAGTGAACGGATCTTCATGTACTTCATGAGTCCGTAATAGCTTTTATTTGCAGAGGCAAGTCTCTGTACCACTTCTTGATTTAGATCGTTGTTTGTAGTAATCACTGATCCTAGATAATTGAACTTATTGACCTTTTCAAATATATCATTTCCCACTTGTATCGTTGGGTCTGGTCAGATACTTCGTCTTGCTTTCACTTACCTCAAGTCCCATTTTCCTTGCTGCCAATTCCAAAGAAGAGAAAGCATCTTTCATTGTTTCACTCAAGTTTAAAATGTATTATTATTTATTCATAAATTAGGTTTTTAGTTATGATACTCCTAAAATCATTCCATATAATTCGCAGATTTTAAAAAAAATTCTCAGCAGAAATAGCAAAAGATGTCAGCAGATTCTGTCTGGCCCTAAAATATTAATTAATTTTCTTGTCGGCTCAGTCCCTTTATTAATCAGCCAACTTATCCAGCAAGTTTTTACGCAGCGGATGCCCTTCTAGCCGCAACCCATCTCTGGGAAACATCCACACACACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACATTCACACACTGTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAACATCAGCTCAGTTGGTGTTTCTGTGTGGAGTTTGTATGTTCTCCCTGCCTTCCTGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGCGATACAGGTTAATTTGGTAGGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTTAATGTGTGTGTGGATGATTCCCAGAGATGGGTTGCGGCTGAAGGGCATCCGCTGCGTAAAAACTTACTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCAGATTAATAAAGGGACCAAGCCGACAAGAAAATGAATGAATGAATAAAAGTAATAATATTAATGATAATAATGAATGGTAGCAGCAGCAGCCCTCATAGTAGTTGTTGTAGAAAGTAAAATAATAACAAAAAGAAATTCTTAGGCTGTGTCCGAAATGGCATACTTTGACCATACTATAAAGATGCGAGCCAAGCAGTATGTCCGAATTCAAGCAGGATGACCTACTGTACTAATTACAGCGGGATTTTGAAGTGCGCATACAATGAATGCTACGCTATGATGTGTGTAGGTCATGTGATAATGACTAATGGCGGATGTAGTACGTCTGAGTTCCATTCATACCACTCCCATTTCGGCAGGGCTTGGTATATGAATCTGACAGGATGATAACCTTGGATGAAAATATTACTGTTTCATGGTATTGATTACTACTCTAAAATATATTCATTTAAAATGTCTGGGTAAGTCGGTGCCAATAGCCTAGCGGTTAGTGCATCGACACGTAGCACCAAGGTGCTCACTGCGACCCGAGTTCGATTCCCGGTTCAAGGTCCTTTGCCAATCCTTCCCCTTCCTCTGCTCTGTAAAAATCTTCACTGTCCTATCCCAATAAAGGTGAAAACCCCTTAAAAAAATTGTCTGGGTAAAAAATAAAAACTTTTTCCCCTTTAATATATTTTATTTTGAAAAACATTTAAAAATATTTTGTAACAGTAAACATCCCAGCAGGCACAGGATGTCAACATGACGTCAGATTGATGATGTACCTGAACGTCGAGGGGACGTTACATTTTTTTGGAATTGAAAATCAAGTTGACATCAGAACCCAACATCAGGCTGACGTCAGTGTCCAACATCCAACCTAAAATCAACCAAATATCAATATCTAATGATGTGACAGCTCGACGTTGTGTGGACGTTACCACGATGACGTCTATCAGACGTTGGATTTTGGTTGCCATACCTGATGAGTAAATGCCAGTATTTAATGTCAATATGACGTTGGTTTAAGATGTTGGCTCGACGTAGGATTTTGGTCACTTTCGAACACCAAAATCCACCAAATATCAATATCATTTGACGTCATTATTGGACGTCAAATTAACGTTGTCCTTAGACGCTGACTAGACATTGAATTTTGGTCAGCTGATGTCATGACCTACCTAATATTAGTACTATAATTAATAATTAATACTATAATTACGTAACAAACAAAACCTAATATTAACCTAATATTAATATTTTTTACACACATCTTAGAAACAGTATAGCAGAAAATTTGGCCGGTTTTAAAACCTTGACTTTGCCAAATCCTGGTATACCTTGAAACATGGTTATCGTACCATGTCTACTCCATTTCATACTTTAACTAACACACTTTTCCAATTTTTGTGTAGTACTTAATTTCCGGCACGGCTTTAATGTTTTTGCCTATTTCATTTTTTTCCTTTCTCAATTTACTTGTTAG
Seq C2 exon
TATGTCGGACCTTGAGTTCGTAAATGTGTGCGTAATGAAGATTCTTGCTGCTGTCCTCTGCCTCCCGCTGACGGTGCTTGGAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088795:ENSDART00000125008:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]