DreINT0021092 @ danRer10
Intron Retention
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4586049-4586447:+
Coord C1 exon
chr20:4586049-4586216
Coord A exon
chr20:4586217-4586342
Coord C2 exon
chr20:4586343-4586447
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGGAATTGATGTATTTGTAGGCA
3' ss Score
4.11
Exon sequences
Seq C1 exon
AGACTGGACATCTTCACCAAACCGCATGCAGCAGCTCCCCCTGATGGTCATCTGTGGGACTGCAGCCTGGAGAGCCTGGTGTTTGTGCTCGCCCCGGACGGTCAGATCATCAGCGTCCCAATCAAACACGACTCTCTGGTGTCCGATGTCCTCACGCTGGCGTGTAAG
Seq A exon
GTAATTCAGCAGTCTTTCCTCGCAGTACAGTAGCTGAACAAGCACAAACAGCTGAGGTTTTACTAGGATGCATTGGTTTCGAGATTTGAGATGTGCTTCATATGAATGGAATTGATGTATTTGTAG
Seq C2 exon
GCAAAGCATCTGGATCCAGCTCTGCACGTCCTGCACATGAGGAGACATCTGGGCCAGGATGTTGAGCGGATCACTCCAGCACCCACAGATCTGCTCAAAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233:ENSDART00000168322:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219610=RBD=PU(54.4=55.4)
A:
NA
C2:
PF0219610=RBD=PD(42.1=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCACCAAACCGCATGCA
R:
TTTGAGCAGATCTGTGGGTGC
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]