DreINT0021832 @ danRer10
Intron Retention
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65289774-65290844:-
Coord C1 exon
chr5:65290681-65290844
Coord A exon
chr5:65289842-65290680
Coord C2 exon
chr5:65289774-65289841
Length
839 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TTTAGAAATATGTTTTTCAGACC
3' ss Score
4.88
Exon sequences
Seq C1 exon
GGTTACCAAATGTTTTCTAGTCAAAAGTATTTTTATTGGCGGCACTTTTTTGTCACGGGAGGACTTTTCTTTTTTAAAGTTATCTGTCTTTTACCTTTATATTCTCTCTAAGTGATTTAAATAACCTTTAAGCCAATATGAATCCAACTGTCGACTGTTCCGAG
Seq A exon
GTTTGTATTTTTAAACGAGAGAGAGCGTGTGTGTGTGTGTGTACTGGTTTTGGTGGTTTAGAAGTAAGTTAAATGTTTTTGTATAATGAAATTGGTATGACATAGCTGTACTTTATTATGGTGGATTACAAACATAAGTGATGTAATAAGCGGTTTTGGTAACATTTTAGTTCGGGTCACAATTCACAGAATTAACAAACAATTAACTAACACTATAGCTTAATAAACTACTAACGTTAATTAGCTGTTTGTTAATATTTAGTAAGCTAGAAGTTGGGTTTATGTATTGGGTAGAATTAGGAATGCTGAAAAAGAACACAGTTTATGACTACTAATGAACAGTCAGTCTATTAATAATCAACAGGTAGTAAACCAGAAGTAAATAGCATGAATTATGACCTAAACTAAAGTGTTTTTAATGTACAATATAGACACCTATGGAAAGTCCCTGTTAACCACCAATACTAACGTGTGTGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGAACGAAAAGTCAGATAGACAGCAGTTTTTTTTTTTTACATGTTTATTTATTAGCATTACAAATTATGGTAACCACACATAGACCACTATGGTTTAACCATGTTATTTGTAGTAAAAAGTATTGTGTTGTTTTTTAATATCGACCAAAAAGACAAAATAATTATTACTACTCATCATTAGTATAATGAAACCATTGGATTTCAAGGGGGGCAATCTTTCCTAGTCATGTCTTATTCAATCAAGAACTACAGGGAATCTTCTTCATTGAAAATGAATATATATAAACATTTTAGAAATATGTTTTTCAG
Seq C2 exon
ACCCCAGTACTAAAAAAGAAACCTGAATTGGATGGGGAGCTCATTATAAAAGAAAAGGCTGAAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035:ENSDART00000170677:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(5.9=17.4)
C2:
PF134141=TPR_11=PU(5.9=17.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAAAAGTATTTTTATTGGCGGCA
R:
AGCCTTTTCTTTTATAATGAGCTCCC
Band lengths:
206-1045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]