DreINT0021836 @ danRer10
Intron Retention
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65289591-65289841:-
Coord C1 exon
chr5:65289774-65289841
Coord A exon
chr5:65289682-65289773
Coord C2 exon
chr5:65289591-65289681
Length
92 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TCACTTATATGTATGTCTAGTTA
3' ss Score
4.65
Exon sequences
Seq C1 exon
ACCCCAGTACTAAAAAAGAAACCTGAATTGGATGGGGAGCTCATTATAAAAGAAAAGGCTGAAAAGCA
Seq A exon
GTAAGTGAAAATGCTTATAAACGTAAATGATTCTTGCTTATATATTCTTATAAATAAGAACAATATTTACATTCACTTATATGTATGTCTAG
Seq C2 exon
TTATGAAACAGGTATTATTTCCATGGCACATTCTCAGTTTGATAAGGCCGTGTCCTGTTTCTCAAAGGCCATAGTGCTCCAGCCACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035:ENSDART00000170677:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(5.9=17.4)
A:
NA
C2:
PF134141=TPR_11=FE(44.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCTGAATTGGATGGGGA
R:
CTTATGTGGCTGGAGCACTATGG
Band lengths:
143-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]