DreINT0022906 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26093581-26093821:+
Coord C1 exon
chr7:26093581-26093665
Coord A exon
chr7:26093666-26093768
Coord C2 exon
chr7:26093769-26093821
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAAGTGCAG
5' ss Score
-5.76
3' ss Seq
ATTCTTTTTTCTTTAAACAGCCG
3' ss Score
8.35
Exon sequences
Seq C1 exon
ATAAAACATCGATTATCTTGATTGGCGTCCTTGTGCCACTCGGCGTCCTCCTCATACTTACAGCAACTGTGTGCATTTACAAAAA
Seq A exon
GTGCAGGTATTCAAGAATAAATTGGCCAACATGCACTTGAAAAAGACTTTGAGTTCATTTTTATTGGGTAAACTAATATTGGAATTCTTTTTTCTTTAAACAG
Seq C2 exon
CCGCAAGAAAAAGACTTACGATTCAAAAAAATTTGAGCTGAGCAAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATTATCTTGATTGGCGTCCT
R:
CTGTCTTTTTGCTCAGCTCAA
Band lengths:
130-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]