DreINT0023148 @ danRer10
Intron Retention
Gene
ENSDARG00000097394 | ZNF557
Description
zinc finger protein 557 [Source:HGNC Symbol;Acc:HGNC:28632]
Coordinates
chr15:1040161-1042750:-
Coord C1 exon
chr15:1042690-1042750
Coord A exon
chr15:1040293-1042689
Coord C2 exon
chr15:1040161-1040292
Length
2397 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTATTTTTGTTCAAACCCAGAGA
3' ss Score
5.46
Exon sequences
Seq C1 exon
AGAAGTGGAGAAACATCTGAGTGTGTCTGGTATTTATTAGTAATTCTCTCCCCTGTTTCAG
Seq A exon
GTATGTGTTTTCCTAATCAGTTTAATGTAATGTGTTAATGTTCTGACAGCGGTAAGAGTGTCCGGGTTCTGTTGAGAATATTAATAAGAGTATTTAGTTCGGAAGAGCACGAGCTCTGGGCTCCATTTTTGAATATGATTAACACGAGGCCATTAGTGACATTATGAGCGCGCACATTTTCAATTGATGTTCAAGGCTGTTGTTTAATGTTCTGTGTGTGTATTCCTGGGAAAAGTGAAAGTAATTGGCACTGTAACAGTGATGGATAAATAATTAGAGAAAGACGATGCACATCCAGCTAAAATAATAGTTTAAAAAGATTAATTATATGTTGTTTAAATATTTGGCTTTAGTTTCAGAGTTCTTCTGGAAATCCTGGAAAATGCTTGATTTTTAATATAGCGTTTTCAAGTTTAGAAAAGTGCTTGGATTTTGGACAAAGTGCTTGAACCTGGTTGAATTTGCAGGGCTTGAAATTGTGACTGTTTTGGTTGCATACGTGCACTATTGTGTCTATGTGACCTCAATATATATGTTTAAAACTTGTCTATGTGACCTACATATATAATATGTGATCCCAAATATATTTGGGAGCATTTGTGCGAGTGCATAATCTGTTGTGCGATTAGTTTTTTATTGCAAAATGTTCACCGCATGTGCGCATTTGTGGAGCTAATATGCCAAAACAATCTGAATTTGAAATGTGTTAAATTGAATTATTAACAATTGTAAGTTAATACTACTGATTATGTCCTATTAGAAATGTTTTTAATTTTGTATTTCTTAACTTGATTATTGAACGTCTGAAATTTAAGACAAATTAAATTTTTAAGTCAGATTTTTATAGAAACGACTGAAACGACAATCCAATGACTGTATAGAAATAATAGCAATGCACATGAAATATCATGAACGACTGGTCATGAAAGGTTGGTACTACACCCAAACAAAATCTGACTGTAAGCTCATTTCTTGAGATATCAACTTTAGGTAGAAAGAGACCAAACTTAAAAGTATACTTCATCCAATAACTAAAGTTTTTATTTATTTATTTATTTTTTAATCATTTTTGGGTGAACTATCCCAATAAATCCAAGTGCTCAACAATTTTTAGTTTTTTAAAATAGCACAATAGATTTAAATGTGAAAAAGTACATACAATATAAATAAACATATTTAACCGTGGTTATTAGGTGCTGAAAAGCATACAAATGTACCTTGAAAGTGCTTGAAAAGTGCTGGAATTTGAAGTTGGAAAAGGTGTAAGAACCCTGTAGTTTATTTATGTTAAAGTATCGGATTAAAAATGAGAAGTGCTTTTCCGACGATGATAAATGCTTAAAACTTTATAAGTGTTCTATAATATTGTTAAATGTAAAATTAACTAACTAGTGTACATTGTTACAAGTTTACATAGCAATTTTTGGAAATTGTGTGACATTAAGATGACAATGATGCTGTTTGGAGAATATGTTTATTTGAATTTGTAAACAAATATGATTACGCATAAAGTCAGCAGTGGAGAAACATCGCAGAGTGTGTCTGGTATTTATTAGTAATTCTCTCCCCTGTTTCAGGGGGTACATCAATAACAGTTTAAAGTCTTGATTTATCCAATAATTATTAACATAGTCATAAATAAACCGCGTCAGCTCTGTATTAAATCAACATATGCGTCTCATTTTAATTGATATCGCGAATCAGTTTATTATATACATAATACAGTCAATGTATTCAGGTATACAGTGATTAAATAATCAAATGTAAAATAAAACCAAAGTCTATAAACAATTCCATTAAAAAATAATCCTTATTAATTTTTTTAAAGTTACAATCGGTGCATTTCCTTATGCCTGAATGCTTTTAAACCCTTCACACAGTCGCAGGCCTCAAAAACATTTGCAAAATGATCAATTATAACCCAGACTCAACATTGCATACACTCGCGATCTAACTAATGCGAATGATCACATTGAGACGTCGATGCTGAAACGATATATTGTGCAGTCCAGCTACTGAACTAGGGAGCTGATTGAAACACACTCGGCCCTTGTGAAAATGAATCATGAAGAACCAAAACATGATTATTGTAGACAAACCATTGAGCAGGTTTATGATATTTGTAGAAAACTTCATTTTCTTGTCGGCTTAGTGTCTTTATTAATCCGGGGTCGCCACAGTGGAATGAACCGCCAACTTATCTAGCAAGTTTTTACGCAGCGGATACCCTTCCAGCCGCAACACATCTCTGGGAAATTGTAGAAAACTGTTCATAAGAGTAGTAATCAACGTACCAACAGAAAATCCTTTCTGCCATGATAAATGCAATTTATTACACTAATCAGTCTGTTTTAAAAAGGGAGAGATTTACTTTTGTTTATTTTTGTTCAAACCCAG
Seq C2 exon
AGAAACACATAAAGATGGCGTTTATTAAAGAGGAGAGTGAAGACATCAAGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTTAGAGTCAAACATGAAGATCCTGAGGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097394:ENSDART00000154195:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF0115514=HypA=PU(5.6=33.3)
A:
NA
C2:
PF0115514=HypA=FE(34.9=100),PF156161=TerY-C=PU(29.6=71.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]