DreINT0023238 @ danRer10
Intron Retention
Gene
ENSDARG00000014825 | ZNF865 (1 of 2)
Description
zinc finger protein 865 [Source:HGNC Symbol;Acc:HGNC:38705]
Coordinates
chr16:13726119-13732674:-
Coord C1 exon
chr16:13729891-13732674
Coord A exon
chr16:13729780-13729890
Coord C2 exon
chr16:13726119-13729779
Length
111 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTGTTTAGTCTGTTGTGCAGGTT
3' ss Score
4.72
Exon sequences
Seq C1 exon
TGAGAAAAGGAGTGGCAGAAAGAGCACCTTTACAAGAATGGTAGTGGAGGATGTTGCTTCCAACTGTGGAAAAAAGAAGAATATATTAATGGAAACTTGGAAACGGAGATGTAAGCCATTTATACCAGAGTGGATTTAGAATGAATAAATATTCAATGAAATGAAATCGGCCCATGGGATTTGGAGGGATCCATCTTGCTGTGGGACTGTCATGAAATGAAAAAAAAAATGTAACCAAGCAAGTTTTTCAATGAATTTGAACCACATTGATCACATTTTTTTACAGCACTTTCCAAAATGTAAATGCATAATTGCATCAAGTGGCATTTATTCTGCCAGTTCATACATCTTTGCACTCTGATGGAACATTCAAACTGAAATTACAGTATCAGAGGTGAATTGTACAAAAACTGTGATTACATGGAATCCAGTGTGCAGCCAAACGGAGTTGATTTTTATAATCCCATGAATGAAACATCCATGGAAAATGATTTTTTTGCAGAAATCAAAAATTCAAGTTACAATCAAAGCAAAATGTCCTCCTTAAATATTCACCAGAATATTAAAAAACGTGGTGCATGTTTAAGTGAAACAACATAAACATAAGGAACATGTTAGAAAGCACCATTTTGCACTGAAACTGCTGAAACTCAGTTGGAAAGCTTTAAACAGACATTGTTGCTGCTCATAGAGCAGAAGGTGTTGCCACTGCGCACCCATGTTTCAGTAACTGGGAGATGTTCCAGTTTGGAAAATACAATGTGGACATCATAGAGATGCTGAGTGGACACCAGTCCCATCAGTTTAAAAGTCTTGGATTAGAGCGACAACTTCAACACCAGCAACAAGTGCAGCTTCACCAACACCAGTTACAGCAGCAGCAACAGCAGCAGCAGAGTGAGACGTCTGGGTCAATTTTGTCTGGACTTGGCTTAGGCCCACTACAAGGATCTAGAGGCAGTGCGTTTACAGATTCCACATCAATTTTTGCAAAAATGAGTGCACCTCCCCCACCTCTACAACAACAGTCTTTGTCTTCATCCCAAAGTTTAAGGAAGTCAAGCAAAATGTCTGGAAGCAGTGGCAGTGGTGGAAGTCATGTGAGTGGGTACCCTCAGTTTTTGCGCACATTCCACCCAACTGAGAGCACCCTTGCACAAGAGCAGTTGCATCCAGGAGTAGGGCGATTTGATCATTTTGCCAGCAGTAGTGGAAGTGGAGGATTAGTTACATCTGTTCCACCGCCACCACCCCCACTGCATCCTGGCCTGTCAGTACCTCAAGCCGCCCCTGGTCCATCAACCTCCTCCCCGTCTTCCAGTTCTGTTTCAACGTCCAATAACCCTCCCAGCAGTAGTGCAGTAACCACCTTGAGCCATCAATTAGCAGGATCTCAGTCTGATGCCCGAAGCCTACATCAACAGTTTAGCTGCATGTTGGCAGCAAATCAGTATTTTCTTTCTGGAGTACCAGCCAATTCCAGTCTAGAACAATTTTTAGTTCAGCAAGGAAGTCATAACCACCTTGGGCTTGGACTGGGCCAAGCTGCAGGAGAGGCAAGTTCGGCTCTCGCTCCTCCCCCCGCTCTTCATTCTTCACACACTCATAGTCACCCCAGCACTCTATCACAGCCTCAACAGCCACCAACACAACAGCAGCAACTACCACCACACACTTTGTCTCACCCCCACCCACATCCACACCATCCACTGCACTCCTCCTCACAGCCTTCCTCACTCGGGGGCTTTGACTTTCAAGGAATCCCAGTTCTTTCATCCAACCAGCTAGCATCTCTAATGCAGCAGGAAGCTGGGCTGCCACTTCCTCTTCCACTACATCTTTCTTTATCAAAAGAGGAGGGAAAGGGCGATGGCGCTGCTGGAGGAGGTGGCTCCTCTGGTGGTAGGAGAAAAAAAGCTATGGCTGGCTACCTGCCACAGAGAAAGACTGAAAACAACAACAATAATAGCAGCAACAATCATAGCTCTACAAACCCCAACAGTAGCACTTTAAGAGCACTGAACCAAGAGAACACAGCAGGCTTGGATGGAGGTGGGGGTGTTGGTTTGTCAGGTATTGCTGGAGACCCTTCCTCGCACTTAACTTCTTCATCCTCTACTTCTGTTGTGTCATCTTCTGTAGCCTCTTCTACATCAGTCTTAGTGACAAACGGCTCGAAAACGGGCAGTCATGGTGTCATGCCACCACAATCCGAGACAGAACAAGAAGCCCTTTATCATTGTGGTGAGTGTGGCAAAACATTCACACAGCTCTCTAGTCTGCGCAGGCACCTACGTAGTCATGAATTAACCACAGCAGGCACAAGTGGCACAAGAAGTAACATTTTAAACCCAGTCTTGCATCCTTCTGATCCATGTATTCCGCACTCTACTCAAGAAAGCTCAGCCTCATCCTCATGTGGCAGTCCTGACAAGACTTTTCATTGTTCTGACTGTGGCAAGTGTTTTAAGAAAAAAGGACATCTCCTTCAACATGGTGTTATTCACTCAGGGGCTCGGCCCTATGCCTGCAGTACTTGTAGTCGTGCTTTCAATCGGCGTGAGTCACTCACCCGCCATGAAAAAATTCATGAAGAGAAACCATTCCGCTGTCCAGCTTGTGGCCGCTGTTTTCGTGAAAGTACGTCCCTATTGAACCATGCAGCCTCTGGCACCTGTGGCAAGTCGGGACGTACACCGAGATCTAAGCATGAAAGTAATATAGTTCAAGGCAAGAGCAATAAAGCTGGGGGCTCCCAAGATGGAATAGCGGCTAATGCAGCGG
Seq A exon
GTGAGTAACGTCTAGAGTAGTTTTTTTAGTAAACCCAATCAAGTCAAAATTTTTCATAGGCACTGTGAAATGTGTGTGCATAGCATTATTACTGTTTAGTCTGTTGTGCAG
Seq C2 exon
GTTCTTACCGGGGTGATGGTTTCAGTGATGACTACAAGGACCAGCGCTCTCAAGGTAACATGTATTCTGGAACAACCCCATGTGGTGGCAGCCTGACAGGGACTGCACTTAGGAAGGCACCATTAGCTCCTACTTTGCATCCACACTCACAAAACCCAGGCCAGCAGCATCACCAACAGCCACATCTCCCACTTTCATCTCTGTTAGACGACTCTGAAGATGATGTCACTAGCTCCGTCAACAATGCCATTTCTGCTATCACTGCTGCAGCTGCAAATTGTATGAGTGGTGATCTTGCCCATGGTGGAGGCAGAGGGGAGGATCGAAGGGATATCATTGGTGGATTGCTTGGAGGTCTGGGTCTAGGGCCTCTTGCCTCACCTAGTGGTCCGTTATCAACATCTGGACTGGATAAGTCCTATAGAGGTAGTGCTGTGGTCCATAACCAGCAACCAAATCAGCTTACACCTGGTGGAAAGCCCAAGCGCCCTCGTAAGCCCCGCAAAAAAAAGGAACCCGGAGAGGTTGGTGCTGAGCCTCCTAAAAGAAGGCCTAACAGACTAGGAATGCCTGGTGGGGAAATCAGACCATATTTGTGCAGTGTCTGTGGTCGAGGATTTGCACGAAGAGAAACTTTGCGAAGGCATGACAGAATACACACTGGGGAAAAGCCTCACCATTGTAGTGTATGTGGCAAGTACTTCAGAGAGGCATTTCATCTTAGCAAGCACCACACAGTGCATTCGGGAGAGAAGAACTACAAATGTATTCTGTGTGGAAAGGACTTTGGATATGCCCAGAGCCTTAAAAGACATGGCAAACTACACCAGAAAGGAGAACTGGAGGAAGTGCCAACAACGCCAGGCATAGAAAACCTTAACAGCTATCCATCCTCTGGTGGCAACTTGATTCAAGGGGGCCAAAGCAGCACTTCTTCTTTCTATCCATACTCTCAAGATGTCAAACCACATGCATCAAACACACAGCCCCCACCTAGACTGTACACTTGCGCTATATGCTGGAAATCATTCCGGCATCACTTTCATTTGACTGCGCATCACCAAACGGTTCACGAGGGTGGTGGAGAAAAACTGTTTTCCTGTGAAGTCTGTGGAAAGGCTTTTGCATACTCAAACAGCCTTACACGACACAGGCTTTCTCAGCATGGCTTAACACGGACTGGTCAGCCAGTTGCTCAAAGGAGCACAGGTGAAGAAACTAATGTTGGTGGTGCAATATCAGAGAGTGAAGCTGCAACAAATGCTTTGCTTCAGCTAGCGCCACCCAGTGGCACACATGGCGAACAGCATGGAGTTCTTCACAGCCACCATGCACCTCCCCAACCACAAGGTGGCTACTCCCCTCTGTTTTATATACCAGATGCCAATGCTACACACCCATCTTCATCTAATGCCTCCTCTTATTCTCATTCTCTGCCGTCAACTTCCTCAGGGCCTCTTCTTTGTAACCATCAGCACTCTGGGATAAAAGGTGAACCCATTTATCACATTGGTCACAGGCATACTCTTGCTCCAAACATACCTGTGCAGTCCCTCGCTTTGCCCCCATCAGAGCCACATCAGCAACATCACAATCCCCAGCAGCATCCAGCTGGGATTCAATCTACACAGCATCACACTTTTCAAAGCCAAGAAGAGTTGAGGCGGCGCAAAAAAAAAAAAAAAAGACGGCAAGAGAGAAAGGAGATAGGCTACAAATGGACCCCGGCTGCAAAAGTACAGAGAGAGCAGCCGGAGGTCCCACATGGGGAAAGGCAGAGAAATGAGAAAAGAAATTTTCTCAAGAGAAAAAGGAGAGCAATTCACAGGACTCAACATAAAATTAAGAAGCGCATGGCTGTTCTTGTGAGAATCAGGCGTGGAAGTGGAGGAAGTGCTGTTTATGAACTGGGCCTTCCAGGTGGACTGAAGCTGAACAGGCTTCGTTCTCTCAAAGTTCCTCTGAAACGAAGGCCTTGTCCCCTTTGCCTTGGTGCTACCTTTTCACAACAGGTTGCACTAAAAGTTCATATAGCAGCTAGACATTGCCCCAAAGTGAGAGGCCTTCAGCATCGTTTGAAATGCCCAGTTTGTGGAAAACAGTCTCGCAAATTCCTCTCTGCTCTCATTCACCGAAGCTCCCATTTAGCCAACAGAGCTTTTTCCTGTAGACATTGTCCCTGTCGTTTCTGGAATTCAATGCTCCTCACACGGCACAAGAAGGTGTGTCGAGGGACCTTAGCTAGGTTTCAACAAGAGAGGGCGCTTTGTGTTAAATTAGTCATGGGATCCACATACAGGAGGTTCGAGTGCAAAGGGAACTCTTCGTCCTTACCTTTCTAATGCACTCAATTTTGTCTTTAAATTCATTTTCATATGCACTTTGAGACTAGAAATGTTGGGATTTTAATGACAAATATCTGACTGAGTACACCCTTTGCTCATGTAGACATTGACTTGTGTCATGAGAGCTTTTTCGTTACTCTCTCAATCATTTCAATTGCATTTCCTCTAATAACTCAGATCCCTGAAAACGAACACCTTCAGCGAACTCACAGATGTATTAAATGGAATTTGTTTTAAAGAAATGCTTAGCCTACCTATCTGTGCGGTACCACACCAGTCTTCTAAGTGGAAACTTTATCGAAATGATCCTTGGCTGGCAATAGTTTCACTGATTTGGCTAAACATGTACTGTGCCCTTAACAGTATGCAGTATGCTCACTATTCCTCAACCAATGCTCTGTAGAATTATTCTGTCTCTGATATATATTACCTTGTTGGTGTTCACTTAGAGCAAGTGTGGAGGTGTGGTTTTGTTAATGTAAAAAGTGCGATCAGTATACGAAGAAGAAAAAAGGGTTCTGTTAGGAATACGAGTGTTTTATTTTAAAGAGTATTTAAATTACTGCATGTTGGACATTGCTGTCCTTGTGTTGACAGGTCGAGAGGAATGGCGACTGGGGACAAATCCAATTGAAAATGTACCTTAAATCTTAATAGAGGAACCAAAAGTAACTAATGCATAATAACACATGCTGATTAACAATGTGTAATATCAAATGTGAGTCCCATTTGGCTTTATTTACTGTTTGAGAAGAAAAATACCATTAAAGTAACGTCAGCACTTAAACAGGAAAAATATAATTTTCCCAATAACCAGTCAAAAGACAAAAAATATTTACAAATTTAATTTACAGATTCTTGCCCTGAAGGCAAAGCCTTACCAAATTGTGACAATTATAACAACATATTATGGCTTGTACAATGTAGCGTTTATGTATAGAGTTTAAAGGGTAGAATGGAGAGAAATGAGTGTACTGTAATGTAAATTGTGTCAATATTTTATTATGTTTTTTAAGGAAATGTCAGTTATCTTTTTATCATAGCTACACTTCAGGTAGTTGAAAGAGTGATTGTAAGAGTTATCACTTTAGATCAGGTCTTGATTAAGTGTATTAATGTGTGACACGGTCTGTCCACTTGCCAACTATGAACGTATCCCATGTACTTTTTTCACCTTTTATGTAGAGATGCCATACTTCTTATAGCCTCTTTTTTTCTTTAAAAGAAGAAAATAAGTACGTTTCTATCACTTTATTTACACATTATAAGCTGGTTGTTGATGATACCCAAGCATTTAATAAAATTTGAAAATGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014825:ENSDART00000168978:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.751 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.7)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF0009621=zf-C2H2=WD(100=3.1),PF0009621=zf-C2H2=WD(100=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAACCATGCAGCCTCTGG
R:
GTGCCTTCCTAAGTGCAGTCC
Band lengths:
254-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]