DreINT0023656 @ danRer10
Intron Retention
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12520449-12524817:+
Coord C1 exon
chr3:12520449-12520758
Coord A exon
chr3:12520759-12524558
Coord C2 exon
chr3:12524559-12524817
Length
3800 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CCTGTGGTTTGTGTGTTTAGATT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GCCAGACTGTATATGCAGCAGTTCTACGCCATGTTCCTGAAGAGGGCGCTCTACAGCTGGCGCAACTGGAAAGTGATGGTGGCTCAGTTTCTGGTGCCGCTCATCTTCACAGTGTTGGCCCTCGTAGTGGCCCGTAGCCTGCCCAGCAGCCATTCTTCACCACAGCTCCGCCTGGCGCTAAAACAATACGGCCAAACCCATGTACCTGTTGCTGTTGAAGCTAACGCCGGGCCACTGGCTTCACTTCTGGCTGAAATCTACACCACACAGCTGCCTTCCCAGAATGCCATTGCTGCACCTAATATAACAG
Seq A exon
GTACAAATAAACCAATGAGTTTGAGATGCACCATGTTGTATTTTATATTGTATTGACGATATCTGATAAGCTAGCCATTTTTAGCTCATTTCACTTTGGTAGATAGCAGATGCCGATAATGATTTATATATATTGTTTGTTTGTGTGTGTGTGTTTTTGTTTATGGAAAGCGTCCATTTACGAGTGCCAGGTTTGTGAACTTCCCCTAAGCTTTAGCTTCTGACCTTTAGTGATTGTTAGTAAATGACATAATCATACAGTCAAGTATTCACTTCAGTAATGACCCAACTGCTGACCTGGTCTTAGTTATAGGACTTCTTGTAGAAATGTTAGTAGACACATAGGAAATAGCTGACAATAGACTATTGAATTAATAGAAAGTATTGAAGTGTAGTGGGTGTTATACCTGGGCTGTGCATTATTTTCTAATAATTCAATGGACTAGAGTCAATTATTCTGCTTATACTATAGTAACCACACCGGAATACACTGCTCAGATGTTGTGTATGAATATATTAGTTAGGTTTGTAGGACTAGTTTCTTTAATAATCTCATCTAAAAATCATTGGGTGTAGTGATATGCAACTGTGATGTGGCAAAGCCTGTGTGGAACTACTTTAGCTGTGTGTTTATCTAAATATAACCACATACCTTAAATGCTCATCAGCCAATCAGCATCAAGTATTTCTGTTTTTTGTAAAGCTTTAATTTACATCTGCCAGGTTTGGGATCTTTGGTTTGTTGATCTTCTGACCTTCAGTGATTCGTTAGTAATTAACTTACAATTGGATATTGCACGTGGACTCGCTTTCGCAATTTAATGTCGGCAAATTTTACTTGAATAATGACCCGACTCATGACCTGATCTCATTTTTAGCACTCCTGGTAGACAAGTATGTAGCCACATAGGAAGTAGTTGACAGTAGGCCATTGGATTATTAGGAAATAATGTGTAGTGGGTGTTATACCTGGGCTGTGCATTATTTTCTAATAATTCAATGGACTAGAGTCAATTATTCTGCTTATACTATAGTAACCACACCGGAATACACTGCTCAGATGTTGTGTATGAATATATTAGTTAGGTTTGTAGGACTAGTTTCTTTAATAAACTCATCTAAAAATCATTGGGTGTAGTGATATGCAACTGTAATGTGGCATAGCCTGCTTGGAACTACTTTAGCTGCGTTTTTATCCAAATATAGTCACATACCTTAAATGCTCATCAGCCAATCAGCATCAAGTATTTCTGTTTTTTGTAAAGCTTTTATTTACATCTGCCAGGTTTGGGATCTTTGGTTTGTTGATCTTCTGACCTTCAGTGATTCGTTAGTAATTAATTTACAGTTGGATATTGCACGTGGACTCGCTTTCGCAATTTAATGTCGGCATTATACCTGGGCTGTGCATTATTTTCTAATAATTCAATGGACTAGAGTCAATTATTCTGCTTATAATATAGTAACCACACCCAAATACACTGCTCAGATGTTGTATTTCAATAAATTAGTGATGTTTGCTCCTGTTTATGGGACTAGTTTCTTCAAAACTCTCATTCAAATCCTTTTGTTTTGATATGAAATCTTATTTTATAGTGATATGGAATTGCAATGTGGCCAGAATTTGTGTGGAACTACTTTAGCTGTTTGTTTATTCAGGAAAAAAACTCATGCTGATCAGCCAATCAGCATTAAGTAATTTTTTTTAAAGTGGTTATTTCCAAATCAAATCCAAATAAATCCGAATCCTTTTGTTCTGAAATGAAATCATTAGGTGTAGTGATATGCAACTGTAATGTGGCCAAAAATTGCTGGGAACTGCTTTAGCTGTTTGTTCTTAAAATAATTATATAATAATATCTGAAAATAACCACATGTTCATCAGCCAATCAGCATCAAGTATTTTTAATTTTTGGAAAGCGTTTATTTACAAGTGCCAGATTTGGGATCTTTAGTTTCTTGATATTTATATTCTGACATTTAATGATTGTTAGTTAATAACTTACAGGTGATTATTGAACATGGACTCTCTTTCGCAATTTAATGTCTGCAAATATTCACTTAAATAATGACCCGACTCCTGACCTGATCTCATTTCTAGATCTCTTTTTAGACAAGTAAGTTACTGCATAGAATATAATTGACAACAGGTCATTGAATTATTAAAAAATAATGCACTATTATACCTGGCCTGTTCATTATTTTCTAATTATTCATGAGACTAGAGTCAAATTTTCTGCTTATACTATAGGAACCACACCTGAAGACACTGCTTGGATGTTGTATTTCAGTACATCAGTTATGTTTGTAGGACTAGTTTCTTCAAAAATCTCATCTAAATCCTTTTGTCTTGATTTGAAATAATTTGGCGTAGTGATCTGGAATTGTAATGTGGTCAACTACTTTAGCTGTTTGTTTATCTGAAAATAACCGCACGGCAATTTAAAGTCAGCAAATATGCACTTAAATAATGACCCGACTCCTGACCTGATCTTATTTCTAGCACTCCTGGTAGACAAGTAAGCAGCCACATAGGAAATAGTTGACAATAGGCCTTTGGATTATAAGAAAATAATGCCCACCTGAGGTGGAGATGAAGTGTAGTGGCCTTTATACCTGGGCTGTGCATTATCTTCTAATAATTCAACAGACAAAGTCAATTATTTTGCTTATACTATAGTAACCACACCCAAATACACTGCTTAGATGTTGTATTTCAATACTTTAGTGATGTTTGCTTCAGTTTGTAGGACTAGTTTCTTCAAAAATCTCATCTAAATCCTTTTGTTTTGATATGAAATCATTAGGCGTAGTGATATGCAACTGTAATGTGGCCAAAAACCGCCGGGATTTGCTTTAGCTGTTTGTTTATCTGAAATTAACTTCATGTTCTTCAGCCTATCAGCATCAAGTATTTTTGTTTTTTGGAAAGCGTTTATTTACATGTGTCATGTTTGGAATCTTTAGTTTCTTGATATTTAGATTCTAACCACACCCAAATACACTGCTCAGATGTTGTATTTCAGTACATTAGTGATGTTTGCTCCTGTTTGTAGGACTAGTTTCTTTAAAAATCTCATTCAAATTCTTTGTTTTGATATGAAATCATTCGGCGTAGTGATCTGGAATTGTAATGTGGTCAACTACTTTGGCTGTTTGTTTATCTGAAAATAACCGCACGGCAATTTAAAGTCAGCAAATATGCACTTAAATAATGACCCGACTCCTGACCTGATCTTATTTCTAGCACTCCTGGTAAACAAGTAAGCAGCCACATAGGAAATAGTTGACAATAGGCCATTGGATTATAAGAAAATAATGCCCACCTGAGGTGGAGATGAAGTGTAGTGGCCTTTATACCTGGACTGTGCATTATTTTCTAATAACTCAAAAGACAAAGTCAATTATTTTGCTTATACTATAGTTACCACACCCAAATACACTGCTTAGATGTTGTATTTCAATACTTTAGTGATGTTTGCTTCAGTTTGTAGGACTAGTTTCTTCAAAAATCTCATCTAAATCCTTTTGTTTTGATATGCAATCATTGGGCGTAGTGATATGCAACTGTAATGTAGCCAAAACCTGCCTGGAACTACTTTAGCTGTGTGTTTATAAGAATATAAGAATCAAGTATTCAAGTATCTTATCAACAAGGTATGTTGGTTTAATTTTTCATATTGGGCCAATGCCGATGGTTCCATTTAAAGCAATTAGTAGCTTAGCTATCAAATAGTATAAAAAAATAATGAAACCAGTGACAGTCTTAGTGGTGTCCTGACCTGTGGTTTGTGTGTTTAG
Seq C2 exon
ATTTCTCGGAGTATGTGCTTTATAATGCTCAGAGGGAGGGCGGAGCTTTCAACGAGCACTGTGTGGTCGGCGCCGCTTTCAGAAGCAGTGATGTTATCGGATACTTCAATAATCAGGGCTATCATACACCCGCGACAGCGCTCATGCTGGTGGACAACGCTCTCTTCAAGCTCCTAGCCGGACCCAATGCCTCCATCCAGACTGGAAATGACCCCATGCCACGCAATGTGTCCGAGACGGCCCAGAGCCAGCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524:ENSDART00000165980:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(20.4=77.9)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]