DreINT0025720 @ danRer10
Intron Retention
Gene
ENSDARG00000001431 | actn3b
Description
actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
Coordinates
chr7:6878252-6881924:+
Coord C1 exon
chr7:6878252-6878392
Coord A exon
chr7:6878393-6881741
Coord C2 exon
chr7:6881742-6881924
Length
3349 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
AATCTCCCTTTGTCCATCAGAGT
3' ss Score
6.96
Exon sequences
Seq C1 exon
CGTGTAGAAAAGCTTTGGGAGACGATTGATCAGCTGTACCTGGAGTTCGCCAAGAGAGCAGCTCCCTTCAACAACTGGATGGACGGAGCCATTGAGGATCTGCAGGACATGTTCATCGTGCACAGCATCGAGGAAATCCAG
Seq A exon
GTCAGCAGCTTGTGAAAAGCACATAATTCAACAAATATGACTAGCAATTATGAGTTGTCTCTACGTGTTGTGTTCCATATGTAAAAATATACATACTACCTGAGTAAGTCTTGTCGTGAATCCCAGTTGCAAGAGCAACAGATAATAAGTCGACTTCTAGTTTGTCATTTGGAAAAGTGGCAGAAGGTCAATTTTTCTGATGAATCACAGTTGAACTGAATCTCAATCATCACAAATACTGCACAAGACCTACTGGAACCCGCATGGAGCCAAGATTCTAACAGAAATCAGTCAAGTTTGGTGAAGGAGAAATCATGGTTTGGGGTTACATTCAGTATGGGGGCGTGCGAGAGATCTGCAGAGTGGATGGCAACATCAACAGCCTGAGGTATCAAGACATCTGTGCTGCCCATTACATTACAAACCACAGGATAGCGCTCCTCATACTTCAGCCTCATCATCAAAGCTCCTGAAAGCAAAGAAGGTCAAGCTGCTCCAGGATTGGCCAGCCCTGTTACCAGACATGAACATTATTGAGCATGTCTGGGGTAAGATGAAGAAAGAGGCATTGAAGATGAATCCAAAGACTCTTGATGAACTCTGGGAGTCCTGCTGTCTTTGCCATTCCAGATGACTTTATTAATCAGTGATTTGAGTCATTGCAGAGATGTATTTATGCAGTCCTCCAAGCTCATGATGGAGTCAGACACAATATTCATTCTGTTTATACCGGACATTATTTCTGTTCAGTGACAAAGCAAAGTCAGACCTTACTGTCTTAATTAAACCATTAATAATCAAGGCATGATCATATTTTATTGTGGTAAAATAAGCGTCATCTAGAGGCCTTTGCCTTCTATATAAGCCACGTCTGATACCAAATGATCAACTAGAAGTCAAGTTATTATTTGTTGTTCCTAAAACTTGGAAGACTGTTGTCAGGTAGTGTGTATATAGACAGTACACACAGATATATTATTTAATTACAGACTTTTTTGTATGTGATTAGTCAAGAATAATCATAAACAGCACCAGCAAAAAGCTTCCATAGTATGTTGAGATGCAAGTTTAAATTAAAGCGAGAATAAAATGTCACGTCCATAATATGATGCAGTTTTGACTACAACACAGCATTCACCCTGAAAAAGAAAACGGCTTCATGTTTGTCCTCTGGCAATATTCACTCTACTTCAGTGGTTTCAAAGATGGAGCATGCTTGTGTATTTGAGTTAAAAGTTTTGTGAAATCTTCTTTTAAATGTCGTGCGCTAGTGATAGCAGCAGATAATCATTTCTGCGCCCACATTAATCTTTGCATTGCAGGTGCGAGTTGAACTTTGTTGCTGCGTCTATTTTTGTCACTGATGCAGAAAACACTGTAATGCACCGCAAACCTATTCATCAGCACAATCATGTGCAGCACAGGCTTTTATGAAGGACACCTCGGCCATTACTGCATAAAAGACCTTCATTTTCCACACGCAGCGGCAGAAACGGCACACTCTCTTCTGAATAATCATTTTATAATTTATAAAGGCAATAGTGAATGACCCAGAAAAATACGCTGTTTTCTGTGCTCATGCCGCAGAAACTGCTATGCTGTGCAGAGTCAGCGTTTACGTTTTTTAGAGAATCAACTATGATTAAGAAGTTTACTGATAATTGAAATGAGAATAAATGTTTTAAATATACATTCACTGGAAAAACAAGACGAAAATTAGCTGCACATTTTCATTTTAAAGGGCCATGACACCCCCCTCTTTCGGTTAAAGTCTACTTCAGAATTTTTTCAAAAGATGCATGATTAATGGGCGTGGAGCTCCGCGAGCATCGGGCAGGAGTGGGCGTGGCCAGCAGGGGAGAAGGGGAGCGAATAACTGTTGTTGTCAGCTAGCTTACAAAATGAGACACAAAGAGGAGACGCATGAGTTTATAGTTTACAAAGTTAAAATGCAAAGAAATGAACAGTGATTTAATGCCCTGCTACATTTGTTATTTGTAATTTCATATACAGACAACAACAATTTATATCATTATAAAGATAAGTGTGTTCATGTAAACACTATAAATGAGGATTCTCCCTCAATCCCCGTATCCAGCAGACTCAGTGCAGCAGGTCTCCTGACCCGTCTATTTTAACCATTAGCCCTGCTGGTAATATAGAGGATTTAGGCAAACACAGCAGCACAATGATGTGTCTGAATGTGAACGAACTCCTGACAAAAGACAGCGTCCGCCATTCTCTAATTCTCGGGCTGCTCTCCCGACAAATATGCTTGCAGCACACACACAGCTTTGCTGTATGATCGACTCTGACAAGATCGCGGGGGAAAACATGCAACAAACCCCGTGGATGATGGAAACAAACACATATGAGCCTTCATGAACGGCTAAATACTGTGCAGTGGTTTCCGTGTCTCTCAGCTTGACACTGGCAGGTCTGTCAGGTCTGATGAATAATTAAGCAGCCGGCTCTTCTCATAGGATAAGAAAACTCCGCTATGAATAATAATGAGAAACCGACGCGTCATCATTGCACTTGCAGTTCTGCGCTACGTCGCCGATTTTGATCCCGCCCCAAAAATCATTTTAAACCCGGAAGCTGAAATTAGCTGACAAAAGCTCAAAATTATCCAGTTTTCCCCACAATTAAAGCTGACAGCTGCTAACATTGTCTTAACTGATGCTCAACACACACACATCTGTTAATCCAAAAAAAAAAGTTCTCCGGGGTGTCCTGAACCTTTAAACCAGAAAGAAATGCTGAAGATGTCATTTTGCTTGTCATGTGAATAGATCTTATAGATTTAAAGTCCATGTGAAATATAAACCCTTTTTTTTTTTAGATGTTACTATCACTATGTTAGTCTAAAAGGTGCTGTATGTAAGTTTTTGACTCCTCTAAAGCAGTGGTTCTCAAATTTGTTTTTATCAAGTACCACCTCAGATTAAAAAAAAAAAGTCTCTCCAAGTACCTCCATAATAACGAGGCAGATTAATTAATGGAGTTTGTGTCAACCGCACACAGAGACTAACTTTAAAGGGCACCTATGGTGAAAAATCTACTTTTCAAGCTGTTTGGACATACATGTGTGTAAGTATAGTGTATATACTGTCATATTGGGGTGATATAAACACACCCAGTCCTTTTTTTTATTTAACAACATAAAAACGATGGACCAATTGGAGCAGCTTTCAGATCGACCGCAACTTTACGTAGGAGTGCGGTCCCCCGCCCACCAATAATGATTGACAGCTGCGAGCATTTTTGTTTAAAAAAAGGGGGAGGGGCTACTCTATGGTTGTGTTTTTTTTTTTGTTAATTGTTTGAATCTCCCTTTGTCCATCAG
Seq C2 exon
AGTCTGATCACAGCTCACGACCAGTTTAAAGCCACTCTTCCCGAGGCCGATAAGGAGCGAATGGCCGTGATGGGCATCCAGAACGAGATCGTGAAGATCGCTCAAACCTACGGCATCAAGCTGGTCGGAGTCAATCCATACTCAGTGCTCAGCCCACAGGACATCACCAACAAATGGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001431:ENSDART00000001649:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
NA
C2:
PF0043516=Spectrin=FE(53.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]