DreINT0026408 @ danRer10
Intron Retention
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65221824-65225743:-
Coord C1 exon
chr5:65225392-65225743
Coord A exon
chr5:65221925-65225391
Coord C2 exon
chr5:65221824-65221924
Length
3467 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCTGTTTTTTTTATTGCAGGAA
3' ss Score
11
Exon sequences
Seq C1 exon
AGGGGAACTGCAGCTGGCCCAGTGCAGTAGGAGCTCCTGGGACAGCAACAGTCAGCCGACCGGCAGAGGACATGGTAAACTCTGAAAACCTGATCTGGAGAGTGCTTTTAGGAGAGCGGCTCGGCTCTGATGGTGTCCTCGCCAACATCTCCACCAACCAGCTTCTTACGCATCGAGATGGCTTATCGTCTGAAGCTGAGCCGATGGAGCTGGACTACAGCAGTTTGGAGCAAGCGGGTCTTAATGGCTCACTGCTTGAGTTTACCCTCGGAAACCGACGAAATGACACAGACCTCCTGCTCCCAAACAGAAATCTTACTGCCATTTTACGCAACCGTGGCAATCGCACCAG
Seq A exon
GTAAGGATCACCATGTATCATTACTGTTCTGTTCTGGAGTTTGGTGGGATTTAAAGGGCACCTATGGTAAAAAATCTACTTTTCAAGCTGTTTGGACAGATCTGTGTGTTGGTATAGTGTATAGACCGTCATACTGGGGTGATATGAACACACCCAGTCCTTTTTTTTTCAATTTACCTACAAAAAAAGGGTCGGCCAATTGGAGCTGTTTTCAAATCGATCGCACCATTACGTAGGTGTGCGATCCCCCCGCCCACCGAATTGATTGACAGCTGCGCACATTAACATGTTCCGGTAGTCACGTGTATATGTCAACAAGACCAGGCAGACATACGCAAAGCAACCGGGAATAAAAGGTCTGTTCTGTTAGCTAGGATCAGCAATCATCATCAAATGTGATTAAGAGTAAGTTTCACATGTTTAAAGTGTTTTAAAACAGAGTATGTGTGTAATTAATTACAGCGTTTTACTTCAGCTTTACTTCATCAGCACAGCCGCGTGTCAGAACAATTATAAAAGAAGACGCTTCAATCCCGGTTTGTGGAAGTTAAATCAGGTTTATTTTGTACATTAGCATAACAGATATCCACACAGTACTTGAGGTTAGCCTTAACTAAGCTAAGCGCGCTCTGTCTGTCTGCCTGTGTGTGTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTTAACTTTGTAACGATATTGTGTGTGACTCATCAATGCAACTTCACAATACTGATTAGTAAAGGTTAGTTCTTACTGTAGTATCTCACAAACGCTACGTGAGACCTTCTTCCTTTAAGTCTGTCTGTTGTCTGACGCAGCTGAGAGAGAAGGCATGTAGAAATAGTGGACGGAAAAGACTCGGCTTAAAGGCACAGTACGACAAAACCACCCCCTGCTGGAAATCAGTATAAAACAGCATCTTGTAACAGGTATAATGAAAAATCTGATGCGTATTTTGATCTGAAACTTTATATACACATTCTAGAGACGCAAAAGACTTATATTAAATCTAAAAAAGGGGTAACCTAGGTGCCCTTCAAACATACCTTATGCCTCTTCAGGATGGACAACATGTCTCATGCAGTTGTAATACATAGCAAACAATCTGTGTCTCTCATTTTCAAAATAAAAGTCCCACATACATAGTAAGTTAAACATGAAATTAAAAATAACTAGGGGTGGAAGTTGGTCATTGTTGTCTCACTAGGTGCATATTAATAATCCCAAAGCAACATATCAGTCTCTGTTTTGGCTAGTGATCTCCTGATGATGTGACTAATGTGAATAATGAGAGTCTTAATGGCTCACTGTTTGAGTTTACCCTCAGGAACGGATGAAATGACACAGAATTACTGCTCCAAAACAGAAATATTACTACAGTTTTACGCAACTGTGACGATCAAACCAGGTAAACATCATCGTGTATCATAACTCATACACCATGGAGTTTGGTAGGATCTATAATGCATTTTAAACTCTCTTATCATGCGTTGACACCAGTCGGCAAGAGTGTCAAAGTAGCCAGTAGTCATCCATGATGACACAAAAAAAAAATAAAAGAGAAAACATATAAACGATCCCTCACATGAGTGTAGATGCCATTTAAATTACAGTGTTTATGTCTACAGCATTCTAACAATCCTTTAGAGGGTTTGGATTTTAAAGTTATGCGTTTGTGTTTTATTTATATGCTAGTACAACTAGATGTCTTTAGTCTAGATTCAAACTCTATAGTTGAACAATTCAGCTCATTAGTTGCTCTGCTTGACCTACTGGTAACACTCTAAAGATCATGCCAAGGAACCAATTGATATATTGATTATTTGGCTTCACTGGTGGTTTTTGAATATTAGAAGCAGGGCCTAATCCTCAACACTGGCATGCCAAAGTGCTGCGGGATGGTCTCGGGTGGGACAGTCCTGATCATGGAGGAATGGAATGTGCTGCAGACTCGAGGCTTTGCTTTTTTTTTTTGTTAACGTTCTCCGAGACATTCAAAGAGCACAGAGGAGAGACGGCCAAGCAGAAGCTGGCGGGATTGCATTCCATCATATTTATAATTCATGCTGGGTTCCCTCCGCTGCGTCCAAACACTGCTTTACCAGCCCCTCTGCCAGAGACCATAAAGAACATCTCATGCAATGCCCGTACACACAGTCAAAGACGAGGAGAAAGATTCCAGGTGGTGAGAAGAAAAAGCCTAGGCTGAGCCCAAGGAAGACGAACATAATTCATGATGTTTTGCTATTGGTTAAGGGAAAAAAAGCGCCATAGATCACTCGGGTACAGACTATGCTTGTCGCATCAGATAAATCCCAGGAATTTATCACGAGGAACAAATTTTATTGGCTCCTGTCTGGTTTGAGGGAATGTGCTGTTTTCCAGCCTTGACATTAAGGTAATGAGTGTGACCAGGAATGGTAAAAATGTTAGTGGTTTCATGGCTGGAGTGTCAGTCTGTGTCTCGGCGTCAACAAACGTGAATGCTCTGCCTAATATACAGTGCAGGTGCACATTTTATTGTATTTTAACTATAACTTACCGGCTGCACTGTTTCCAGCATGTTACCGCAACTGCCTCTTTACAGTCACTTACCTGTAAATGTGTTTTACAGTAGCATGGCCCTACCGCAGTACTGTAAAACATCCTTACTGCAAGTTCTTTTTATGGTGAAATGTTCTTTAATAAGTAGAATTTTACAGTACTTTTACTGTAATTTATCTACTTTTTACACTAGCAGTACAAAACCTTTATTTTTAGTATTTATTACAGAATTTAATGAATTCCAAGCAAGTGACAAGTGTTAAGAGCAGACGCTGACAACAGAGAGAAGGATTTAAGTGCTGTTGATTTAAAGAGAAGTCGTGCAGGCAATGGTCAAAACTGGGGCAAACAGTAGCATATAGATAATCCGTAGTCGAAATACAGGCAAATGGTCAGGCTAGGCGGCAAAAAAATTTAAACAGACTAGGATCAAAACACGGCAAGACAAACAGGAAATAATGCTTTGTAATGTTCACTGGGCAAAGCAAGACTCAGCAAAGAGTGTGTGAAAGTGAGCAGTGTATATAGTCTGTGTAATCAGACTTTGATCATGTCCCAGCTGTGTGCGTGCCTGTGTGTGTTTGTGTGTGTGTGTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTAATCATTGGGTGAACTGCTACTGGTGTGAGTACAGGTATGATGACATTTGTAGTTCCTTTGGTGGCAGAGCTATAGTTCTCCAGCGATCTGCATGGGCTAGATTGTGACTGCGAGATCATGTACAACAGTATTTTATATTATTCGTTATACTATATACATCTTAAATGGTTTACAAAAGTAATTTTCATTCTGACGTTAATTAATACTTTTTTCATGAACCGTCTTATTTACCGCTGTGAAAGCACCCTGAGATGCTCTGTTTTTTTTATTGCAG
Seq C2 exon
GAATAACCATAGGCTCCTTCAGAAGAACAAACCAAGCGCTGCTGACATGTACCGGTGGAAGTTGTCCACACAGGAGCCCTGCAGTATGACATGCTCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033:ENSDART00000108729:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=NA C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]