DreINT0027822 @ danRer10
Intron Retention
Gene
ENSDARG00000101139 | agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) [Source:ZFIN;Acc:ZDB-GENE-061103-541]
Coordinates
chr21:7656525-7661673:+
Coord C1 exon
chr21:7656525-7656597
Coord A exon
chr21:7656598-7659219
Coord C2 exon
chr21:7659220-7661673
Length
2622 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTGGCCTATATTCCAACAGGAA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCCCATTATACCCATTGTGTTCTCTTCCTACAGCAAATTCTACCTAAGAAAAGAGAAAGAGTTCAAATCAG
Seq A exon
GTAATGCACAAGAGGGAAGGCTAGAATTCTGAGGTATAAACTTGAAATAAATTCTGAGGAAAAACAGTCCAAATTTTGACATGTAAACTGACAATTCTTAGAAAAACAGTGGGAATTTTGAGGTGTTAGTTTGGAATTCTGAAGGAAAGTCAGAATCACTAGATGAAATATGGAATTCTAGGGAAAACATTTGGAGTTGGGAGATTATAGCTTGGAATTATGTAGGGAAATCAGAATGGCAATATAGAAACTTCTCTCTCTTAGAAATCCAAGTTTTCATCTAGTGATTGACTTTCCTCTTAGAATTCCACATATTGTCTTTGAATTCCATGGGCAAAGTCAGAATTGTTAGAAATTTTTTACATTTTAATCTCTCACATCCATCAGTTTTCCTTAGAATTCCAATAATTCCTTAGAACACATTTAAAATTCTACATAGAATCACTGGATTGAAACTTCACTGGAATTCTTAGGAAACTGTTGGATTTGAAAAATTAAAACTTTGAGTTCTGTGTGTGAAGTCAGAATTGTGAAATGTGAATTTGGAATTCTACAGGAAATATTTGGAATTCCGAGGAAAATGGTCGGATTTGAGAGATGAAAACTTGGAATTCTATGGAGAAAAGTCAGAAATTGTGTGAGGTAAACTTGGATTTCCACATTTTCATCTCTCAGATCCAGCGGTTTTCCTTAGAATTCCATGAAATCCTTTAAAGACATTTGGAATTCTAGATAGAATCACTAAATGGAAATCTAGAATGTTTTGATTTGAGAAATGAAAACTTGGAATTCTGTGGAGAAAGCCAGAATTGTGAGAACTTGGAATTCTAAGGAAAATGTTTGTAATTGTGAGATGTTCTGAGGGAAACATTAATGTGAGACATGAGCGTGGAAATCTGAGGGAAAAGTCTGAATCAGTGGATAGAAACTTGTAATTCTAAGGAAAATAGTTGGATTTGAGAGATGAAATCTTGGAATTATGTGGGGAAAAATTTGAATTGTGAGATGTTAGCTTGAGCTTCTGAGGAAAAAGTCTGAATCACTAGATGAAACATTTTGAAATTATTAGGGAAATATTTGGATTTGTGAGGTGTTACCTTGACTTTTGTGGGAAAAGTCAGAATCAATTTAATTCAATTCAGCTTTATTTGTATAGCGCTTTTACAATGTAGATTGTGTCAAAGCAGCTTCACATAAATGGTCATAGTAACTGGAACAGTGTAGTGTTTAAGTTCAGTTCAGTCCAACACTGAAGAGCAAATTCATCGATGCGTAGCTCTACCAATCCTGAACCATGCGAGGCAGTGGCGACAGCGGAGAGGGAAAAAAAACGTCACCTGTAAGTTTCATTATATGGAAACTTCAAATCTCTTCAAATTCGGATGAAACCAATTAAATTTGAGAGATGAAAACTTGAAATTAATTGTGAGATGTTGGCTTGAAATTCTGAGGGGAAAATCAGAAAGTCATCACTAGAAAGAAACTTGGACATCTTGGGAAAGAAATTGGATTTGAGAGATGAAAACTTGGAATTCTGTGGGGAAAAGTTAGAATTGTGAGATGTTAGCTTGAAAATTTGAGGGAAAAGTCTGAATCAATAGATGGACACTTGGAATTCTGTAGGGAAAAGTTAGAATTGCAAGATCAAAGCCTGGAATTCTGAGGGAAACGTCTGAAACAATATATGAAAACTTGGAATTCTGAGGAAAACAATTGCATTTGAGAGATAGAAACTTGGAATTCTAAGGGGAAAATCTGAATCAATAGATATAAACAACTTGGAACTCTAGAGGAAATATTTGGATTTGTAAGGTGTTACCTTTGTATGTGTGGGAAAAGTCAGAATCACTATATGGAAACTTCAAATCTCTTCAAAATTTCATGAAACCAGTTCAGTTTGTGAGATGAAAACTTGAAATTAATTGTGAGATGTTAGCTTGGAATTCTGAGGAAAAAGTCTGAAACAATAGACAGAAATTTGGAAGTCTGGAAATTTGGCAATCATTAGATGGAAACTTAGAATTCTGAGGGAAAAAGTAAGAATTGCAAGATGATAGCTTAGAAATCTGAGGGAAAAGTCTAAATCAAAAGATGGAAACTTGGAATTCTAAGGAAAACTGTTGGATTTGAGAGGTGAAAACTTGGAATTCTGAGGGAAAATTCAGAGTCACTAGATGGAAACTTAAATTCTAAAGAAATGCATTGGAGGGGAAAGCTGAATTGCAAGGTGGAAACTTGCAGAAAAGAAAAGCTGATGGAATAGTAATGAGCAAACTAGGAATTCTGAGGAGAAAAATAAAGAACTGAATAATAAAGTTTGGAATTTTGAGAATTATGTGGAGACAAAAGTGATAATTGCGAGAAGTGAACACAGAATTCCAGAACTGTCAGATTGAAATTCCAACTTATTTTTCTGATATCTAAATGTGTACATGCTTTTTTTCCACATAATTTCAAGTTAACGTCTTTCGTTTTTTAGCATTACTTTATTTCAGAATGCGAGGAATAATCAGAACTAATAGAAGAATAATTTGATGAACAAGATGTTTTACTCCCACGCTCAAAACAAGCTTTCAAAACAAGAATTTCAGGGATAAAAATATCTGGCCTATATTCCAACAG
Seq C2 exon
GAACCATCACTCTGAAAGTCCTTCCAAAGATCGAGACGAAGGGTCTGACAGCAGATGATGTGACGACGCTCTCCGACCAGGCATTTGGCGTCATGCGTTCGGCATTCATGGAGATCTCGGGCCAGTCCGCCCAGAGCAACGGTCCGTCCACCCACTGAGCTCTACTGTAGCGCAATTTTCATTCGCTCCGACAACACTGGATGGCTTGAGAACCGAGCGTTTTCGTCCCAGTGGTGTGACGTCAACCACAACCAGCAGGCGCTTTTCGTGTCTTCTCCGATGTGTCCATACAGACAAACACAAGCATTCACGTTGACTACAGTACATACAGCAGATGATATTTAGCCTAGTTTTAAAAATCCCCCCCCTCGTCGGGACGCTATAAGCAACAGAAGCAGAGCTTTCTCTTCGTTCGCTTTCTTCTGATGTTGGTTCGGCTCGGATTTTTTTTTTTTTTTTGGAGCGACACCCTGAGAACATCGTGGATTTGTGCGTTCGACATGCATGCCTTCAACTTGTTTCTCTTCCTTTTTCTCGGATCTACCAAGACTCTCGTTTGTGTGTGTAGGTCGCTTTTTATCAAGGTACCCCGCTTGCATTATGGGAAAAAACAGTGACAAACAAATGTGTTTGTTTACTTTTATTGTTTGATTGCCCCTTTTGTTTTATTTCAAGTAACTTTTGATTTAAAGTAAACCAGTTGACCATAAAAGTATATGATCTGTACACTCCAGAGATCTGATTGTGCGCTACTTATTATTTCTGTTCACTTCTGTTGTCCTCCGAAGGTTAGTTCGTAAGGAACCGCTCGAGTGTTGCTTCTTCCTGTGCCATGTGTCTAAAGTGTCTCTCAGCCACTGACTGCGTGATCGTTCAATATTGTGAAAAACACAATGATTATCGATCTGTGATCAAGATTGTTTGATTAGCGCTAAGGATAGAAATACATCTAAATTGGGTTCAGGTTGGTGCTTTGCTCACTCCTTTTTTTACATATAAAGTTATATTTTGATCCCTAAAAATGTATTGCAATCCTGTTATTTCAATTAGAAATATTTACAGTATAAGTATTATCTAACGCATTACAAAGAGCGGCCAATTTAACTAAAGTTTTCAGTCATTATTATTCAGATATTTAAAGGATATTCACAAAAATCAGAGTTGATTATATGTTTGTTGGTGGAATATATTTTTCCCAGTCAAATTATTGACTATTGACTATTTTCTTCCCAATCAAAAAATCAGAATTACATAATGTAAGCTTGTTTTTCTGAGGAAATCATCTGAATTGTGAGATGTATTTTTCTGTGGGAAAAATAGTCAGAATTTTGAGAAGTTAATCTTGAATTCTGAGTAAGAAAGTCAGAATTTTGGGATACCTGCTATATAAATGACCCCTAGAAAAGATTTGAATGTAAATTTCTGAGGTTTATAATGTTTTTTTTTTTTTTTAAGTGTATATTGATTAAAGATTATATTATAAAGGCGCTACAATTCGCCCTCAAAGTGAACCATGTTCACAGATTGTGGCTAATAAGAATAGTTATTGCTCGAAGATCACACTTTAAAATTTATCTAAGAAAGTCAATAAACCTATTAAATATATAACATATGTATAAAATGACATTCAAAATCTCGAAATGACAAATTATTTAACACCTATTTATTAAACCAGACTCTATCAGCAGCTTGTGGTGGAAATATTTATCAATTCTTTCCGATCACGTTGCGTTGTTGAATCTTCTATTTAATGCTTGATGTTGAAATTCTTATCATTTATTAAGAATGTATAACATCCTTTATTTAATTTGTACGATGTTATTTAAGAAGAATGAAGTATTAATGTTTGATTTGGTTATTTTATTTGCAAAATGTCCAAATTAGGCCCTGCGAATTAAACACTGATGCAATTTTTGAAACCCTTTTTATTTTGTGTATTTGGTCACATAATTTTCTAAGCCCCTTGTTTTGCCCTCCTGACTGAAAACACATGCTGCGTATCTGTGTGTGTGTGTACAAGGTGTTGTGTGACGTTCACCAAAGCTATTAAGGATGTATAACAGGCGACGCTTGAAACTCTGATTTTAAGATCCGTTAGACAAACCTGTCAGACATTTCACGGGTCAGCCTTGTGTACGAGTGTATGTGTGTGAGTGTGTGTGGTGAATATGTTTGTATGGTGATCAGACACACAGATGAGCTAAAGCCCATTGTAAAATCTGTAAAGTCATATAAGACGATTATTATATATACAAATGTCGATTGTGGTAGAGTCTGGATGCGACCTGTGTTAAGAACATCTAGAACAAAGAGTCAATAAAATTGTCAGTTTTTCCAGAAGGAATGCTCAGGTTATTTTTCTTCAAGGTTGTTCTGTGTTTCAGCTTCATTCATTTTCCTTAAGCTTAGTCCTTTATTTATCAGGGGTCACCACGCCGGAATAAACTGCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101139:ENSDART00000172174:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PD(6.2=32.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]