DreINT0029706 @ danRer10
Intron Retention
Gene
ENSDARG00000074777 | ank1b
Description
ankyrin 1, erythrocytic b [Source:ZFIN;Acc:ZDB-GENE-091113-6]
Coordinates
chr21:20990739-20991329:-
Coord C1 exon
chr21:20991237-20991329
Coord A exon
chr21:20991137-20991236
Coord C2 exon
chr21:20990739-20991136
Length
100 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CTTATTTGTTGCATCTTCAGGGT
3' ss Score
8.15
Exon sequences
Seq C1 exon
TTGGGTGTGGATGTGAAAAAGGATGTCCAGACCGTGAAGCGTTCCAGTCTGCGGAGAGTAAAGCACTGAAACAAAACACAAACTGTCCTGAAG
Seq A exon
GTACGGGACAGGTAAAAAGATTGATGTAATACTTAAACTCCAGTTTTGCTAAACTGAAGTGGCATTTCCACTTTGAATGACTTATTTGTTGCATCTTCAG
Seq C2 exon
GGTCGAACATCCACTGCCAAATCATCCTTCACCTACGCACGACTGGGAGATCGGACTAGACACAGAGCGATGGGGGGAAAAAACAACATGCAGCGAAAGAAAAACACATCGCAGCCAAATCCAACAGTCAAGCAACCACAGAGGGTTACCAGAAAACAACAAGGAGAAGGAGTTCTCTACCTGTAGTTTTGTAACATTTTTAACAGAAGAAAAAAAAAACGTATTACTAGCATAGGGCATGAACTTTTTGTACAAAATGTGAAGAAAAACACCAACAAAAAAAGCAACAAAAGTGCTTCCTGTCAACTGTAAACGCATGACTGACTGCTGGTGCATGACCTATGAGCTGTCATTATCTAAAAAACTGAAGGGGTACAAGGTAAAGGGCCGTTCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074777:ENSDART00000144361:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGTGGATGTGAAAAAGGA
R:
CTGGTAACCCTCTGTGGTTGC
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]