DreINT0040167 @ danRer10
Intron Retention
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14398243-14400624:+
Coord C1 exon
chr23:14398243-14398262
Coord A exon
chr23:14398263-14400543
Coord C2 exon
chr23:14400544-14400624
Length
2281 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCTTGTCATTTTCGAATAGACT
3' ss Score
5.41
Exon sequences
Seq C1 exon
CCAAACAGAAGCTAAAGCAG
Seq A exon
GTAGGTGTGATGATATGGCTCTTGTGTTCGATGTATTAAAATAATCTTTCTTTGCAGTTTGTCAGAGAGGATTTAATTTTCTAGAGCAAATGATTATAAAAAGAGACTCTTTTGGCATATCTGTCCTAAATATTAACTTACCCGCCACTTTATTAGGTACACCTTACTAGTACCGGGTTGGACCCCGTTTTTCTTTCAGAACTGTCTTAATCCTTCATGGCATAGATTCACCAAGGTACTGGAAATATTCCTCAGAGATTTTGGTCCATATTAACATGATAGCATCACACAGTTGCTACAGATTTGTCAGCTGCACATCCGTTTGGCTAATCTCCTGTTCCACCACATTCCAAAGGTGTCTATTGGATTGAGTTCTGGTGACTGTGGAGGCCATTTGAGTACAGTAAACTCATTGTCCTGTTCAATAAACCAGTCTGAGATTCACGCTTTATGACATGGCGTGTTATCCTGCTGAAAGTAGCCATTAGAAGATGGGTACACTGTGGTCAAAAAGTAATGGACATAGTCAGCAACAATACTCAGGTAGGCTGTGGTACTAATGAGCCCAACTGTGCCAAGAAAATATCCCCCTCACCATTACACCACCACCAGCAGCCTGTACCCTTGATACAAGGCGTGATGGATCCGGTTGCATCGAGTGGTTATTTGAGTTACTGTTGCCTTTCTATCAGCTGGAACCAATCTGGCCATTCTCTTCTGACCTCTGGCACCAACAAGGCATTTGTACCTACAGAACTGCCGCTCACTGGATATTTTCTCTTTTTCAGACTATTCTTTGTAAGCCCTAGAGATGGTTGTGCGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCGGATCAGCCCATCAGGCATCATGAACCATGCTGATGCTCGGATTGAACTGCAGCAGATCGTCTTGATCTTGTCTACATGCCTAAATGCATTGAGTTGCTGCTATGTGATTGGCTGATTAGATTTTGTGTTAACAAGCAGTTGGACAGGTTTACCTAATAAAGTCGTTGGTGAGTATATACAGTTGAAGTCAGAATTATTAGCCCCTGAATTATTAGCCACCCTCTTTATTTTTTTAACACATTTCTGAATATAACAGTTTTAATAGCTTTAATAATTGATTTATTTAAAACTTTATTTATATTTAAAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAAAATTAGACTAAATCTTTTTCAAGACACTTCTATACAGCTTAAAGTGACATGTAAAGGTTTAACTAGGTAAATTAGGTTAACTAGGCAGGTTAGGGTAATTAGGCAAGTTATTGTATATTGATGGTTTGTTCTGTAGACGAAAATATTGGGGCTAATAATTTTACCTTAAAATGGTTTTTAAAAAATTAAAAACTGCATTTATTCTAGCTGAAATAAAACAAATAAGGCTTTCTCCAGAAGAAAAAAATATTATCTAACATACTGTGAAACTTACTTTGCTCTGTTAAACATCATTTGGGAAATACTTCAAAAAGAAAAACAAATCCAAAAGGGGGCTAATAATCCTGACTTCAGCTATATATTTGGGTTGATGAGTTGATAAGACTTTATGAAATCATTCTAATTTGTTGATTTGGTGCTAATAAATTATTTCTATGAATGTATTTATGCAAAGAGATATTTAATTATTATCATATCAAATAATAACATTTAATTACTTAATGCATCATTGCTGAATAAAAGCTTTCTGAACACACAAAACTTTTAAATGGTAGTGGATGCTAAAATTGTGAAAAAAAAGTCTTTGATACCTCTCATAGAATATTATACACAAATATCTACAATACCAAAATAATTGATAACATTTCCATATTTTTTTTCAGTTTTGAGGGAGCATTTTCAATAAACTGAAAAGTTTATGCAAATTTGGGTGCTTTTCAAAATAAAATGTTTGATATTTTTGAAAACAACACATTATTGTCATACATTTTGTGAAAATTGTATCAGAATTTTGTAAATGCACCATGAGGTATTTCCTTCTCTTGAAAATTTAGAGATCCAAACCTAAAGTTGCAAGAAAAGAAGTTACATTTTGAAAGGATATTTTGAGTCATCTCTGTGGCAGCCTTGTATTCTGTAAACTGTAGGAAAGTATCTGACATTGTCTCAGAAAATTCCATTTATAACAAGCAGTATGTACAGTACATAAACAGCAGTATGTACTGTACCGACCTGCCTGTGCTTCAAATCCAGTCAGTTCTACATGAAACTGTAATTCTCTTGTCATTTTCGAATAG
Seq C2 exon
ACTGAACACATTCCTCCATATGATGTGGTGCCATCCATGAGGCCTGTGGTTCTGGTAGGACCGTCACTAAAGGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881:ENSDART00000087280:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.4=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]