DreINT0041216 @ danRer10
Intron Retention
Gene
ENSDARG00000103317 | capn5a
Description
calpain 5a [Source:ZFIN;Acc:ZDB-GENE-061103-214]
Coordinates
chr18:3384063-3387138:-
Coord C1 exon
chr18:3386942-3387138
Coord A exon
chr18:3384185-3386941
Coord C2 exon
chr18:3384063-3384184
Length
2757 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAG
5' ss Score
2.69
3' ss Seq
ATGCTTGTGTGTCTGTTCAGAGA
3' ss Score
7.48
Exon sequences
Seq C1 exon
GTGGAGCTGAACCGCATATACCGCATGCACTCCATCCAGAAATCAGTGGGCAGCTCCATCTACATCAACTCCCGGAGTGTGTTTCTGCGCAAGGACCTAAAGGAAGGCCGCTATGTCATCGTGCCATCCACCTTTGACCCGGGCATGCCGGGCGACTTTCTGCTGCGCATCTTCACTGATGTGCCTTCAGACTGCAA
Seq A exon
GTAAAGCCCATTATTAGAGAGACCAGTGTCTGTTTACACTGCAGTTTCATACTTCAAGCTTTTATCCAAATATCTAAAAGTTCTAAAATCAAGACGAATTTTATAGACTATTAAATATATAGTCTTGTTTTCAGAAATGATGTCAAGATTGAGTTTTTTCTTAAAAGCAAGCAAAATGATCTGCCAGTGGGATAAGAAGAATAATCTTGTTTTCTCTTTGAAGTAAGATTATTTTACTAACACCGTTGGCAGATTATTTTGCTTACCTTAAGGAAAAACTGACTCACTTTTGACATCATTTCTGAAAACAAGCCTATATTTTTATCTCGTCTAGAAAATGCTTCTTGATTTAAGAATTTCTAGATATTTTGACTAAAAAACAAGAGATAAAAAATCGAAATCTGTAGTAATAATTACATCATTGAAGTTATATTTAATTGACTTTTCTAATTACTATGTCTGAAAAGTCATTTAATTACTTGACTCAATGCTACTTTAAACCCAATATAGATTATTTTAAATTTTTAATCGAAGATGGCCAAAAGACACATACTTATGCATTTTAATAACAAACAAAACTTTCTTTAATTAATAATAAGAATTACTGTGCAAAAATGTTGTCATATACAGTTGATTTTTTTTTCTTTTTTAAATATTTCCCAAATGATGTTTAACAGAGCAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGAAGAATGTCCAGTTGTTTTATTTTGGCTAGAATAAAAGCAGTTTTAAATTTTTAAAAACCATTTTTAACATCAAAATTATTAACCTTTTAAGCTATATTTGTTTCCAATAGTCTACAGAACAAACCATCGTTATACAATAACTTGCCTGATTACCCTAACCTGCCTAGTTAACCTGATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCATGACAAAGAGAAAATAAATCAGTTATTAGAAATGAGTTATTAAAACTATTATGATTAAAAATGTGTTGAAATCTTCCCACCGTTAAACAGAAATTGGGGGAAAAAATAAACAGTGGGACTAATAAATCTGACTTCAACTGTATATCAAAATTTTCAAATTAAAGTTTTAATATGTTGTCGCTGACTAATTTCTGATTTCACTCAATAATTCACGGTAGTCTTGGTACATATAAGCTTCTTTAGTTGAAAACTAGAATTATTCAGCAAAATATATTTGTATTTATAAACAAAAGATGCAATTACTCTGCTTCCCTGAATTGATTTATACAGAACCGTTGCATTATTTCACAGTATTCAAGAAAAGTAAATTATAAATACCTATTGTTAAATTACCTAAAAATTAAAAGTACGTTTGTGAGTAAAATATTTTGTGGGACCATCAGTGATTTAGTAATGTTAGCAGTCATAGGTTTTATTATGGTGGCTTGAGAAAGACACCATTCTGATATTCTTCATAAAGTTCTTCTTCTTTCGTCTTCTGAGACTAATTTTAAAGTGTATCTCCTCTTAAGCCTTTCAAGCTATATCCTTCAAACTTTTGTCAAACCTTCAAACTGATCTGACTCGGGTTGCTATATCTTTTCTAACTGATCCGACTTTCAGTTTTCTGAAAAATGACCCAGAAAATTTCCAAAAGTCCCATTCACTTAATATTGGCCCAAACGTTGTGAGCTCATAACTCTGTATCAGACTGTCCTACAGACTAGAGTCTGGCCTCATTCAACTCAGTCTAGCAAGCAGCCAATTACTGATGACCTTTAAACTTACTAGCCACTCCCTAGCAACCAATTCCAGCACCCTAGAAACTGTCCCATAGACTGTGACTAGCTATTCTAACACATACAAAAAATTCTAACATCCTACTGACATGCGAATCTTGCTAGTGACATGCTAATTCATGCTAGAATCAGGCTAGTTACATGCTAATTCATTCTAGAATTATGTTAACAACATGCTAATTTGTGCTAGAATCGTGCTAACATCATACTAGTTCATGTTGGAATCATGCTTACAACATACTAATTCATGCTAGAAACATGATAACAACATGCTAATTCATATTGGAATCATGCTAACAACATGCTAATTCATGCTAGAATCATGCTAACAACATGCTAATTCATGCTAGAAACATGCTAGCAACAAGCTATTTTATCCTATAAATATGCTAACAGCATGTTAAATCATGCTAATAACATGCTAATGTCTTAGAATCATACTAATTCATGCTAGAATCATGTTAACAACATGCTAATTTGTGCTAAAATCATGCTAACAACTTGCTAATTCATGCTAGAAACATGCTAGCAACAAGCTATTTTATCCTATAAATATGCTAACAGCATGCTAAATCATGCTAGTAACATGCTAATTTCTTAGAATCTTACTAATTCATGCTAGAATCATGTTAACTCATGCCAGTACCACGCTATTGCCAACCTCAGACACAGTAATCAACTTTAAATCTTTTTACTGGCTTGTTTCAGTCTTTAAAGTGGTTGTATTGTTGACTGCAGGGATCTTAAACATTCTTTTAGCCAACTTATTACTTTTTCAAACTAAATAAACTACTTCCAACAGGCATCCTCAAGCCACCATAAAGTTTGTCCTCAAACTTTACTATCTAGTTATTATTGTTATGTTTTGATACTCTGAAAAGCATAACCGTAAATTTAAACACGTCTGTGTGTATGCTTGTGTGTCTGTTCAG
Seq C2 exon
AGAGCTGACAGTAGACGAGCCACCGCAGACGTGCTGGACCAGTTGTTGTGGGTATCCTAAACTGGTGACCCAGGTTCATGTTATCAGAGCAGATGGACTCAAGGCTCTGGATGGAGATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103317:ENSDART00000169049:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(46.1=100)
A:
NA
C2:
PF0106717=Calpain_III=PD(0.1=0.0),PF0016825=C2=PU(22.5=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]