DreINT0042344 @ danRer10
Intron Retention
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20470817-20471357:+
Coord C1 exon
chr4:20470817-20471041
Coord A exon
chr4:20471042-20471128
Coord C2 exon
chr4:20471129-20471357
Length
87 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
ATCTGTGTTTTTGTTGTCAGGTC
3' ss Score
9.82
Exon sequences
Seq C1 exon
GTTACTGCAGAGATCTCGTCTACAACACTCTCACAGCTACAAGCTAAGAGACGATCTGAAGAAGGAGGTCTCACAGACATTACAGGCTTTGCAGGAGATGCAACAAAATCGAGAGGAGCAAAAACTAAAACTCAGGAAGCTCACGGACACCGTGAACATGCTAGAGCAAAAAAAGCTACATATCTGCAAGCGCTATGAGGCCGAACTGCAAAAGCGGAATCAAGA
Seq A exon
GTGAGACATAGAGTCTGGGGGATACAAATCTGGCAGGTGAATTCTCACAGTCTGTGCTGATATTTCTATCTGTGTTTTTGTTGTCAG
Seq C2 exon
GTCTGTGCAGCTTGCAGAAAGAGAGAAGGAATGGCGTATTTTCAATGAGAAGCTTGGTGTACTGGTGAAAATGACTGAAAACAGCAACTTGGAGATGTATGACATGGAAGATGAAATCAGAAACTTGAAAATGGAACAGAAAGAAGAAGAAAGACAGAATGATCTGCACAAAAAGCAGTTGTCAAACAAACTAGCTCTGGAGGAAGAGCGTGTCTTATTACAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794:ENSDART00000017947:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCAGGAAGCTCACGGAC
R:
TTCACCAGTACACCAAGCTTCT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]