DreINT0044428 @ danRer10
Intron Retention
Gene
ENSDARG00000044811 | cdk9
Description
cyclin-dependent kinase 9 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-321]
Coordinates
chr21:6036227-6040555:+
Coord C1 exon
chr21:6036227-6036317
Coord A exon
chr21:6036318-6040388
Coord C2 exon
chr21:6040389-6040555
Length
4071 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GCTGGTCTCATTTCTTTCAGCCA
3' ss Score
6.8
Exon sequences
Seq C1 exon
TTTCCCATCACGGCTCTGAGGGAGATCAAGATCTTGCAGCTTCTCAAACACGAGAATGTGGTCAACCTCATCGAGATCTGCAGAACAAAGG
Seq A exon
GTGAGGGTGAGGATAAAGTCCTGTTTAATACACTTTCCATTCTGTCGCTGCTCTCATTACTGCTGTGTTTTACAGAAAACAGGTTGAACGTGATAGTAAGTGAAAACTGGGTTAGTCAGAGAGAGCAAAACACTATCAGGCTGCATTTACACTGAATAGTTCAAGTGACTCAATTCTATTTTTTTTTCCTCCCATGTGGCACAGATCGGATATGGCTCATGTACATGCTAGCAGTAATAAAATCACATATATTCCGATTTGCTCAAATCAGATTCAGGCCTTGTACATATTTGTAAATTTATCTGTTATGAATCGGATCCATGCCCTCTGCAGTGTAAGCAGGTAGATCAGATTTTCACCTCTCAATGCAAGTCGCGCATCATTAAAAACCATAGTGAATGATGTCAACTCTGACGCTGTCATTTCAGAACAGACTTCAGCAGAGTTGCAAACCTTCAATCTCATTCACGAGCACTAACCAAGCTTTTATATTGTCATGTAGCACTGGTATTTACGCATGTTAACGAGAGAGAGATATTAAACTGTTGGATAAATCACGCGTGGACATTACATTAAAATGCCTACTGGTTTAAAAAGGCCTATGTAGCATCCTTTGCAAAAGGAATGGGATGCATTAGAAAATAATAAATTACATGAAATCCAACCTGAAATCTCACACAGAATTTGAAGACATTTTAAGAATAGATTTGATCAAGTAGTTTTTAGCAGATGTCGTATTGGGCATACAAGAATAACACATGTTTTTTTGCCCCAAAGTGAGAACTCTACTCAGTGTTTGTGCTGCAAAACTCCCCTTACTATAAAACACAGTTTACTAGACTGTCCTGCTTTGAATGATTCCAGAAAACTTTATGAAATGAACTTTTATAAGGACATTTTTAACAAAGTGAAACCAGAAAAGATTTTGCAATTTTTATCATGCAACACTAAAAATCTTTTTTAATTTATGTATTCTTTTGTTTGTTGATTTTAAATTGTATATTTATTGTTGAAAGGTTCCTGCCATGAAAATAGCCTTGGTTGCTGACATGGCATTAAATAAAAATACATTACATGTAGCGTCCTTTCCCTATGGTCTAATCACCAATAATGCATGTTCTTCACTTAATATTTCTCCTTTGCACTAAACTCCTCTTTGAACTGCTGCATTTTCTCTTATGCATTATATTATTATTTTAGGGGTTATTTCTCAATAAAAAAGTAAAAATGAGGAAAATTTATCCCAAAAAGTAACTTATAACTAGGCCCACACAAAATCTGCGCGTGCAGAACTCCGCAGATTTCTTTTTTAGCCCATCATTAATTCTGTTTATTTACTTGAGTAAATGTGTAAATCTGAATTTATTCAGTGTTTATTCAGTAATTTATTACTTTTTATTTCATTTATTACTGTTTTAGTTATGATACTCCACTGGATACTCCCAAAATAATTCTGCAGAAATCCGCAGATTTTTACCACAATTCTCCGCAGAAATAGCAAAAAGCGTCCGCAGATTCCGTCTGGCCCTGCTTACAACCCCATACCAATTTATATAAATAATAAACACAACCAATCTGGTACAAAATACTTTTCTGAATTTACTTAAATACAAATAATCAAACAAAGATATGCTAACAAAAGAAATAAAGGTTTGTTTTAAAATAAAGCTTTTCGTTCTCCTCCTTTCAAACTTAAATAAACAGCAAAATCAACAGTTCATTTAGAAAAGCCCAAAAATAGTCCATATAAAATTAATAAAAAATTAACCAAACTCCGTTGCAGGCCTATTTTGGTGCTGGTGTTCGTAGTAGCATTAAAACACAGTTGCTCTTTCGCCCGAAGGGCAAATAAATAACAGTTTACTCCTACCAGAGCCCAGGGAACACGTCAGAACCGGAACTACAGTTCAGGAGGGAATAGAGGGGAGTCCGCAGTGTGACGTTGCGTCCAACACTGCCAGAAGAGCCACTGAAGTATCCATGTTTCTCAAGGCACTATCTGAAACGTCCAGGTTTTTTGATGTATAGGACGATAGTTATCCGCGGAGATCTCCGGCTTTGTGGCTAACACTGTATTTAGTGAACACAGTGTCCCAAATGGTCAGATGATATCCAAAAGAGGAAATTGCTATCCTCTGACTCATAGACATGTAAATCTCTCTAATTTGACAATTATTGGAGCAAATTGTCTCTCTCATCTTCACCCAGTGCTCTTCCGCCCCCTTCATATACCTTCCGAGATCTTAATTTTGGGTCACCTTACAGCCACTTCCGTCATGACACAACAGGTAAAACTTCTTACTTAAATATAAATTCACAAACAAAACGTCCATTATATAATAGACAACTGGGCTTCACTTTGACTGAAAGAAGATGGCCAAATGAGAACTTTTCTGTCATAAACTATAGTAAAACAACTGGTCAAAAAGAATTACTAAAAAAATTAAACCCTGCAAACAAATTAAATACAGGAATAGAGATATGGTGCTCTATTGTCATTAGCTGTGTAAATGCAGACAATCGGATACGAGTCACTTTTATTAGATGATATACGTTGGTCAAAAAAATTGGATACAGTTACAAAATCAGAATTGACCATCAAGATCTGCAGTGTAAATGCAGCCTTGTTGATTTGATGTGCAAGTGTCATTTCATAGGTTCTTTCAGAAATAATGTACAATAGGCGGCTACTGAATGCTGTAAGTACAAAACTTTTTTATACTCATTTAAATTTAACTGTATTATGAAAGTTATAACAAATTATCTGTTACAATTAAATTATACTGACATTTATTTATAAACATCAAGCCTAAATTAATAATTTGAACTCTTGTGTGTTGTTCAAATTGACTACCCTTTCGTTATGTTTGAGGCTGTTTTTGCCCAATTAACTTTCATTATAATGACACTTTTTAATTGCAAAGCCTTGACAGCATATAATCATGCATTCTTGATTTTTTGGTGAATTTCGCTGTAGGGAAGAAATCAAATGTGCAGTTTTTACTGTAGATCATCAGTTTGCAGCATTAACCCTTTAGATAGGCCTGTGCAAAAATGTTTCCGGCTATTATATGGAGTTCTGTAGAGTAAAACTGCAGATTATAGTGTGTGTGCTTAAATACACTTACTATGTTCTGAGAGCTGAGAATATTTAGATTTTCATTTTTAGGCATGTCAATGCAAGTATGCAAAAGTTTGTCTCAGGCACACACACTTTTCTTCATATAGAAGGAAGAAACTAAGCTCAATTTTCACTTTAACTGATTATTAACAGTAACATTAGAAGGTTTCACCTCTTCAAAACAGGATTAAAAAGCAACAATCTAGAATTCTTTATGTGGTGTCAAAAATGTCATTATAATGGAAGTCAATTGGGCTAAAACAGCCACCAACATAACAAACGTGTAGTCAATTTGCCCAGAGTGTATTTGTTAAATTTTTGCAAAAAAAGATTTGTAACCAAAAATCATTCCATTTGCTGAAACACAGAGAAAGTTGAGGCCAAATTAAGACTCAAAATCACCCCAGAGTGGATAAAAACATCCCCAACAGCACACAAGGCTTAACCAATATTTGCAATGCACAATATAAATACTTTAATTTAGAACAAATCCAAATTTGTGGCACCTATATTTATTCATTTATATACCATTTATTGTGTTATGCAAGTCAATTTAGAATGAGTCATGGGACAATTCAGATAATTTAAGTGACTTGAGTGAATTATATTTGCTCTGTGTACACTAGGGGGCACTGTAGGCTTTGTTTTGAGGAAGTGCGTTCATATTAGTTTTTTAAAGTCTTAACAGCCTGTATTCCTAGAAAATACAGCATTAAAAGCAGTGATGTCATTTATATGTTGATATTGTGATTTAATTTTTTTTCTGCATAAATATTTCATTGACACATTAAGTAATTACAATTTAAAGACATTTATTTACTACTAATTGTATTTTGTAAAAGTTAAGCATTGCAAGTTTTTCTTTTAAATAACATTATTTCATTTAGCTCTTGTTTAGAGGATTGTAATACCAATAAAAGCGCTTTGTTTGCTGGTCTCATTTCTTTCAG
Seq C2 exon
CCACCCAGTTTAACCGTTACAAGGGCAGCATTTATCTGGTGTTTGACTTCTGTGAGCACGACCTCGCTGGACTGCTGAGCAACGCTAATGTTAAGTTCACTCTGGCGGAGATCAAGAGGGTCATGCAGATGCTGCTCAACGGACTCTACTACATACACAGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044811:ENSDART00000065859:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]