DreINT0045412 @ danRer10
Intron Retention
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10406097-10406449:+
Coord C1 exon
chr10:10406097-10406203
Coord A exon
chr10:10406204-10406316
Coord C2 exon
chr10:10406317-10406449
Length
113 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
GATTTTGTGTGTGCACGCAGAGC
3' ss Score
7.71
Exon sequences
Seq C1 exon
ATTTACTTGATAAACCTGCGCAGACGTCAAGACCGCCGGGACAGGATGTTATGGTCTCTGTATGAGCTAGAGATTGATGCTAAAGTTGTGGATGCTATAGATGGAGC
Seq A exon
GTAAGTGTGGATGAATGCGCAAGACATGTTCTGTTGTAGTATGACATTTTTGTATCCACAAATGCTAAATACAAAATGAAAATGTTGTGCTTTGATTTTGTGTGTGCACGCAG
Seq C2 exon
AGCTCTGAACAGCAGCGATATTAAGATTCTAGGTGTGGATCTTTTACCTGGTTACTACGATCCTTTCTCTGGACGCACACTGACCAAAGGAGAGGTGGGCTGCTTCCTGAGCCACTACTATATCTGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049:ENSDART00000109432:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(18.9=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATAAACCTGCGCAGACGT
R:
CTCTTTCCAGATATAGTAGTGGCTCA
Band lengths:
234-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]