DreINT0045458 @ danRer10
Intron Retention
Gene
ENSDARG00000058992 | cers2b
Description
ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
Coordinates
chr16:1365059-1365623:+
Coord C1 exon
chr16:1365059-1365109
Coord A exon
chr16:1365110-1365530
Coord C2 exon
chr16:1365531-1365623
Length
421 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATTTATTTGTCCTCGTTCAGACA
3' ss Score
6.69
Exon sequences
Seq C1 exon
AAACCCTGGTTATATGATTTAGAAGAGATGTGGAAAGGGTTTCCCACTCTG
Seq A exon
GTGAGTTACATCTGCTTTAATAAACATCAGGTAGATGCTGTATGCGCTGTAGACGCCAGCACAGGCTCCTCTTAAATACTTGCTTCAGGCTACATTTTTGTGAAGCTGCAAAAACAAAACAAACACTCACCGGCCACTTTATTAGGTACACCTTATGTTATATTTCCAGTACCTATGCCATGAAGGATTGAGAAAGCTCTGAAGGTGAAAGGTGCTCCAACCTAGTACTAGTAAGATGTACCTAATAAAGTGGCCGGTGAGTGTACATGAGAGTCAGGATATAGTCAGCATAATGATAATGCAGACATCCTATAAGTGAAAGTTTTTGCCTACTTCTACTTTACATTGAGCTGAAGTGATCTAAAGCTCATGTCACCGAACAGCTGATGAGTGATTGTTTTATTTATTTGTCCTCGTTCAG
Seq C2 exon
ACACTCCTGCCGTCTCAGTACTGGTACTACATGCTGGAACTGGCCTTTTACACCTCTCTCCTGTTCAGTGTGGCGTCGGACGTCAAGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058992:ENSDART00000149299:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]