DreINT0045480 @ danRer10
Intron Retention
Gene
ENSDARG00000031387 | cers4a
Description
ceramide synthase 4a [Source:ZFIN;Acc:ZDB-GENE-020808-1]
Coordinates
chr22:4344335-4346631:+
Coord C1 exon
chr22:4344335-4344441
Coord A exon
chr22:4344442-4346474
Coord C2 exon
chr22:4346475-4346631
Length
2033 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTTTCATGTTTGATTTGCAGAAT
3' ss Score
9.13
Exon sequences
Seq C1 exon
TCAGCCAAGATGTTTAACTACGCTGGATGGAGGAAGACCTGCGATGCCCTGTTTGTTGTTTTCGCTGCAGTTTTCTTAGTAACTCGCCTTATAGTTTTCCCTTTTAG
Seq A exon
GTAAGAATGTCACTGGACTGTATGTGAAGATGAACTTGATTTATAAACTTCTCAAATACATTGAGTACAACTGTGGCGACAAATCATTTAAGAAATAGATTCTGCTTTGATTTTGAGATTTACTTTGCTTCCTTTTTAAAAGCAGATGACGCTCAATGCTAATTTTTAACAGCAGATGACATTCTAGGCTAGTTTTTAATCAGCAGCTGGCACTCTAGGCAATTTTTTTTAACAGCAGACAGTGTTTTAAGGCGAGTTTTAAGCAGTAGACAGTGCTCTATGCTATTTTTTTCTAACAGCAGGCAGTGTTTTAAGGCTAGTTTTTAGCAGTAGATGGTGCTCTATGATATTTTTTAACACTAAGTGGTGCTCTAGGCTGGTTTTTAACAGCAGACGTGATTAAATTTATTTTTTTTGCAGCAGATGGTGCTCTAGGCTAGATTTAAAGTGTACACTCAAGTGCTTGTGTGTTCAGCTGATAGATGTAAGTTGGCTTTGATATCATTAAAATAATGTAAACAGCTCTATGTGAAGATTATTGTAATTTGCTAAAACCTTTTATTAACTTCATTAAAACAATTTCATATTCCAGTAGTATGTGTAAAGAATTAGATGCAAGCAGAGTATGGCTGTTTGTAAAGCTTACAGCCGCCATCTGTTGTTAAAACTAGCCTAGAGTGCCATCTGTTGGTTAGAAACTAATGTAGAGCAGTGTTTCTCAACCACGTTCCTGGAGGACCACCAACACTGCATGTTTTGGATGTTTCCTTTGTCTGCCACACCCATTACAGGTCTTTCAGTCTTTGCTAATGAGCTGATGACCTGAATCAGGTGTGTTTGGTTAAGAAGACATGCAAAATATGCAGAGCTGATGGTGCTACAGAAACATAGTTGATAAAAACTAGTGTGTCATCTGTTGGTTAAAAACTAGCCTAGAGCACCATATGTAGGTTAAAAACTAGCCTAGACTGCCATCTGTTGGTTAAAAACTAGCCTAGAGCACTATATTGGTTAAAAAGTAGCCTAGACTACCATCTATTGGTTAAAAACTAGCCTAGAGCACTACATATTGGTTAAAAAGTAGTCTAGAGTGCCATCTGTTGGTTAAAAACTAGCCTAGAGCATCATATGTTGGTTAAAAACTAGTCTAGAGCGCCATCTGTTGGTTAAAAACTAGCCTAGAGCACCATATGTTGGTTAAAAACTAGCCTAGAGCACCATATGTTAGTTAAAAACTAGCCTAGAGCATCATATGTTGGTTAAAAACTAGCCTAGAGCACTATATATTGGTTAAAAAGTAGCTTAGAGTGCCATCTGTTGGTTACAAACTAGCCTTGGGCACCATATGTTGGTTAAAAACTAGCCTAGACTGCCATCTGTTAAAAACTAGCCTAAAGCACTATATATTGGTTAAAAAGTAGCCTAGACTGCCATCTGTTGGTTTAAAAACTAGCCTAGAGCATCATATTTTGGTTAGAAACTAGCCTAGACTGCCATCTGTTGGTTAAAAACTAGCATAGAGCACCATATGTTAGTTAAAAACTAGCCTAGAGCACCATATGTTGGTTAAAAACTAGCTTAGAGTACCATATGTTGGTTAAAAACTAGCTTAGACTGCCATCTGTTGGTTAAAAACTAGCCTAGAGCACCATATGTTAGTTAACAACTAGCCTAAAGCATCATATTTTGGTTAGAAACTAGCCTAGACTGCCATCTGTTGGTTAAAAACTAGCCTAGAGCACCATATGTTAGTTAACAACTAGCCTAAAGCATCATATTTCGGTTAGAAACTAGCCTAGACTGCCATCTGTTGGTTAAAAACTAGTCTAGAGCGCCATCTGTTGGTTAAAAACTAGTCTAGAGCGCCATCTGTTGGTTAAAAACTAGTCTAGAGCGCCATCTGTTGGTTACTAACTAAGCTCAGAATCAATTCAAGAGGGAATAGCAATGCATTTTGAAAATGTAGATATTTAGTCACAGCTCTTGGCAACTGGAAAACACCTCAAATCTAAGGTTTCATGTTTGATTTGCAG
Seq C2 exon
AATCGTCTACACCGCTGTGGTGGATTCATTGGACGTATTTTCTCCATACCCTGGCTATTATTTCTTTAACGGCCTGTTACTGGTTCTTCAAGCTCTGCACATCTTTTGGGCTTGGCTGATTCTTCGAATGGTTCACAAATTTGTCTTTTTAGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031387:ENSDART00000042194:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]