DreINT0047530 @ danRer10
Intron Retention
Gene
ENSDARG00000044776 | clic3
Description
chloride intracellular channel 3 [Source:ZFIN;Acc:ZDB-GENE-010507-2]
Coordinates
chr21:13571594-13575466:-
Coord C1 exon
chr21:13575346-13575466
Coord A exon
chr21:13572062-13575345
Coord C2 exon
chr21:13571594-13572061
Length
3284 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CAACAGATGTTTTATTTTAGGAT
3' ss Score
6.76
Exon sequences
Seq C1 exon
GGAATGTTCTAGATGTTAGAATGGTTTAGATTGAACCGTTCGAGGATGATTAAATACTTTATTATTATTATTATTAATATAGACATGAAGATAATTAGTATTCCTCTGCATAACAGTTGTG
Seq A exon
GTGAGTGTTTCTCTCAAAATTGTAAGAATATATAATACACAGTTTTCATTTTTGCGGGACAGAAATTATCGTTGAGTGACAGTATGAATGTATTTTTTTGTATGTCTAAGCAACTAAAATAGATTATTAAGTTGTCTTACATTGATACGAATATATAGTGATGCAAATCAGACGGCTGTAATATGTACTATATTATTTCATAGATTTATTGTTTAAGCACATATTTACTGTTTAATTGTTATGTGACAACATACATATTGCTTTGTGGTTGTTTATTAGTACGCAAATCACATTAATATAAGTCTAAATGCCAATATTAGAGGTCCTTTAACTCTACTCCTTATACCTAAACAAAGCTACTAAAAGTATAAATAAGCAGTAAGTAGGAGTTTACATCTTATTCAAGCACATAAAAAAGTAGCCTACTTTAATAGTATTTTCTTTACGACAGTTGTGGTCGAAACCAAGTTGCCAAAGTATTATTGTGACGTTATGATTATTATGCTTGGCATCTATAATTACTCTGGTCATTTTTGTAAGGGGCGATGCCATAATTGTCTTTTTTAGATTAAAACAAGTTTAGCTGACGTAGCTTTAATCACTAATTGTTTAATGACTCAGACTATTTCGAACAAAAGCAGCGTTGTGATTTAGTACATTCATTCTCTATGCTAACATGTGCTAGCTTGTTAAATTGACATACCTGTAATACGCCTATTCAACAGTCATGTTCTTGAAATTATCATTTTGGCTTATTTGACAAATAGTTCATCTACTAACGAAACAAAAAATTGAAGCTCTTTACCATGTTTTTACATTGAGCAGCATGTTTTTTTCTTCTTGGTGTGGTTGCAACATTCAATAGAGTTTGAAACAATAAGCATTCAAACGAATGGTTTTTCAGGCACAGACAAATGCTATGTCACACCTCATACATAGTAAATCAATCACTATCTTTTGACTCTTCCTTAACTGAAGTATTTTCACTGTCACTCCAATTCCACAGTTCAAAGGTCAGAGTACTTCAACACTGATCAATGCAACAACAATCTAAAGTACCGTTACAGTTTTGACATCACATAAAATTAACAATACAACCATATCCTCAGAATAAACAGTTTGCATAATAAATTTTTAAATTAAGTTGTTACCATTTTTGATAGCTTGTTTTGAAGTGCACTTTTATTCAAGTCAATTCAATTAATCTTTATTTCTATAGCGCTTTTACAATGTAGATCATGTCAACGTAGCTTAACATAGAAGTTCTAGCAAATTGAAACTGTCTGTCCAGTTTTTAGAGTTGAAGTTCAGTTTAGTAGTGTACCGGTAGTTAAGTTTTCATTGCTGAAAGTCCAAACACTACATAGCAAATCCATCGATGCGCAGCTCCACAAGTCCCAAAACCAAGCGACCTAGTGACGACTGGTAAGGAACAAACCTTCACCAATTGACGAAGTGAAGGAAAAAAAGCCTCGAGAGAAACCGGGCTCAGTTGGGCAGGACCATTTCTCTGATCAAACTTCTTGTGCAGAGCTGCAGTCTAGGCACTGGAGGCTGGATGTCCATCGTGGAGAAGCTGCAGGTGTGAGTAGGTTACCAGCGGGGGTTCAGGTTGGTCCTCGGGATCAGTGCAGAGACTTATCTGTCATTGGGGTCTTTCAAGAATCAGTCTCAAGCTTTCTTCCACAGCATCTGCTCAGGATACAGCCTGGTCTAGGAATATGGCAACAAAAAAAGTATTGTTCCTATGTTAGGTTTGGGCTATAAAATCGGTATCAATATTTATTAACAGCATGAAGTTTTAGTATGAAGCGCTATAGTTTTATCAATATGTGACTGCTGAGCACTCACCTTGAAAGGAATGCCATTTCCAATGCAGGCGTGCGACTGGCACAATGCACATATGAGAGCGACGCACACATGTTGTGCAAGTGGCCCACATGTGATGCATGACGGGCGCATTCACCAAGTTGAAAACATCTGAACTTATCTGAATGCTGCGAGTGCACCGCGATTTATAAGTAGAACTAACCAATCTGCTTCATACTTTGTATGGAATATAAACATTTCAGTAATAACGGCAGACTAATTACCTTAGACAAACACAGCACACCCAAACACTGCAGTGCCTTTTTACTTTTCTCCATAAACTTGCATCAGAGCTGCAGCAAAGGTTTGTCCATTTGTCATCCTCTGAGGAAACGGTGGATGATTGTCTAGTTACGAGAGACGCCAGGGGAGCACGAGCCCAAAGTCCATTGTAAATGGTCAAGGAATCCACGCATGCGCACTTGTCACTTCAGGTCAGAATAACAACACATGCGAAAAAGAGTGCTGTGGCTAGCAGAGTGGCTTTTTGGTTTCTTTTCTTGTTAATCCCAGCTCCCCATCTGAAAGATTTTTAGCATAGTGGTAATGTAGTCATACAACTTCACAATTTGCAATGTTGCAGTATGTATTTGAATAAAGATGGCTGGTTCCTTTACTTGAAAGCTCTGATTTGATTATCATAATTTGTGTTGTTGACAGAGTTTGAGGTTTACTGTATCATTGTTGTTCACACTTAAAGTTTGCTTTCTTTGTTCAGTATTTACGCTTTACCATTGCACACGCTTTGTAACATTTTATTTATCAAGTTTAAGAGTGTCTTTAACACTTATGTTTATTTTATTATAAAGAGATGAGATATTTTGTATAAATATTTTTGTTTTTGACTTTTAAAACTGTTTGCCTTAGTAATGTTGGTAAATTAAAATAAAGTGGTTAAATAAAAAAAATTATAATAATATTCCTAAATGTATTGCTAAAAAAAAATGAAATATTTATAGATATTGAATGATATGAAACATGATATTGTGATTTTTTTTTTTTGCAATATTGCTCAGCCCTACCCTATGTAAACCCCCAAAAATGATTTTGTGAAATGTTTTCATGTTCAGTCTATACACTGCATTTTTAGTCATATTTGGCAATTGGGGTCAATTATTGTCTGTATGTGGAATTTTTCAGCAATGCAAAGAAAAAGAAGTTTAGTTTTTAGTACATACTAATAATCAGAATTTCTTTTATATTTCTCACATCTGGTTTAAATCTCAGATTTTTCCATATCTTCCATTTCTGATTTTTGTCATGTTGTTATAATATCTTGTCTGTTTAAAGTGTGACAGTCACTGACAACCATTTACTTTCATTGTAAATTGAAACTGAATATGCACTCAAACAATTCCTTTATATGTTTGGAACAACACGATGCTCTGTTAATGACAACAGATGTTTTATTTTAG
Seq C2 exon
GATAAACTTGGGTAAAAACACGCTGTGACTGTACTGGAATGATGGGAGTAGGACAGAACTGAGCAGTTTGGAGAGAAACTCACTATGACTAAAGCAGCAGAGAATGAAGGAAGATACAGGTTGGACAGGTTCGGCCAGTGGGCTGGTATTCTGAACACTCAAGACCAATGGGGTGTGGTGGGAGTTAGGCTTCTCAAAGGAAATGATAGAAACTGTGGTTGGGAGAGGAAGAAGAAAAGTAGCTGCTTTTATCAGCATCGAAAAAGTTTAATTCTTCAGAGATCGACTAGACGAAGCATCAAAGCTTGAACTCGTGAGGTGAAGTGGACTCTAATAAGACTCTGAGCTGGACTGATGTAAACTGACCTCATTCTCCTGAGATCCTGGGAAACTGAGACACGGCAGAAAAAAGGAGGTATTGGAGAACCAAAGATGGCTGAAGCTGCAAAGATTGAACTTTTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044776:ENSDART00000146717:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]