DreINT0047616 @ danRer10
Intron Retention
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54658705-54659056:-
Coord C1 exon
chr16:54659022-54659056
Coord A exon
chr16:54658796-54659021
Coord C2 exon
chr16:54658705-54658795
Length
226 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
3' ss Seq
GGTTTGACCTTTGCCCTCAGGAA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GGACCTGTTCCTTCCAGAATGATACGTAAAACGAG
Seq A exon
GTCAGGAACACTGATTGATTGATTGATTGATTGATTGATTTGCAGATTGATTGATTGATAAATTTTATTGATTGATTAGCTGCTTGAGTGAGTGACTGATTTATTAAATGATTGGTTGATTAACCGATCAGCTGATTGATTGACTAATTGATTGATTTGATTAATTGATTAACTGATTGTCAGTGAGTAGTGTCCAGTGTAATCATGGTTTGACCTTTGCCCTCAG
Seq C2 exon
GAAGCAGAAGTACTTCTACAGAGGTCGTCTGGACTGGGATGAGAGCACGTCAGCGGGCCGATACGTCAGAGAGAACTGCAGGCCGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870:ENSDART00000083713:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(3.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]