DreINT0047635 @ danRer10
Intron Retention
Gene
ENSDARG00000005908 | clk4b
Description
CDC-like kinase 4b [Source:ZFIN;Acc:ZDB-GENE-050227-19]
Coordinates
chr21:32248332-32250158:-
Coord C1 exon
chr21:32250079-32250158
Coord A exon
chr21:32248423-32250078
Coord C2 exon
chr21:32248332-32248422
Length
1656 bp
Sequences
Splice sites
5' ss Seq
AAAGTATAT
5' ss Score
1.45
3' ss Seq
CATGACTGCTTTTTTGTCAGGAA
3' ss Score
6.51
Exon sequences
Seq C1 exon
ACTCATGATAGTAAGGAGCATCTGGCCATGATGGAGAAGGTTTTAGGCCCCATTCCAACACACCTACTCCAGAAAACAAA
Seq A exon
GTATATTACCAGCACAATATTACTCTTGTACTCCACAACATTTTTTAATAGCACATGTTGCCATGCGTTCAAGCTTTTGAGAGTGGTACGATTTGGGAACAAGTTGATTATTTTCAGTTAATCTGTTAAATTAATTCAGTAATTGCAAAAGCTTAAAGATCCAATGTTTTTCTTTCATTAGCAATTGCTTCTGCGCTCTTGCTTTGCTTTAACAGCATTCAGCTTTACTCTGTTTCATACTACCAGGATAATACGGTTTGAACACTTTAGCTTATTTATGAACATGATTTCTTTAGACGTCCCATAGGATGTAAGGAAGCCATTCACTTCTGTGATTTCACGGTCACGTGGTTTCTCAGTCACGATGTCATCAAAATATGCCTTTGTACGCCTTTAATCTAAATTAGAGTGATCAGAGTCTTGGATGACTTTGGCTATATTGTATATAAAAAGCTATATTCTGTGTCTCTCTCTTTCTCTCTCTCCCTCCCTCCCTCCTTACCTCTCTTTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACACACACACACACACACACACACACACAGTTAAAGTCAGAATTATTAGCCCCCCTGTTTGGTTTTTTCCAAATTTCTGTTTAACGAAGAGAAGGCTTATTCAACACATTTTTAAACAAATTGGGTTTTAATAACTAATTTCTAACTACTGTTATTTCTAATAACATTTCTAATAACTTGGTTAATTAGGTTAACTAGGCAAGATAGGGTAATTAGGCAAGTCAGTATAACGATGGTTTGTTCTGTAAACAGTAGAAAAAAAATGCTTAAAGGGGCTATTAATATTGACCTTAAAATTGTTCATGAAAAATTAAAAAATGCTTTATTCTAGCTGAAATAAAACAAATAAGACGTTATCCAGAAGAAAAAATATTATCAGACATACTGTAAAAATTTTCTTCCTCTGTTAAACATCATTTGGGAAATATAAAAAAAACAAAAAACAAAGGGGGCTAATAATTCTGACTTGAACTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTTTATAAATTTTTTTTATTTTAATTGATGGCACAATGGCATAATAAATAAATTATAAAAAAGGGCTTAAATCTCTCTTGTAAGTGGGATGGAGCTTAACACATGGGAGAGCGAGAAATGCACACATCAGGGGATCTGGGCAAATACATTTAAACACTCATTAAGTGAATAAACGGGAATAAAAACAACAAAAAAGGCTTTTATGCCTGTAATCCAGCGTATTGAAAACTTCACTTGATTCTTCTTTTAATGGTGGTTGATTATAAAGAGATGCTAGAGAGGAAACATTGATTCAGTCTGTTTGGATGACCTAAATTAATTAATTGTCAGTTTTTGTTGTAATAACAATCTGCACATTTAAATTTGAATACTTGAGCACATTTTTAGGGTATCTGTTCTAATTGAGAACTGCTTGATGCGTGTATGTTTCTAAAGGCTTTTTTTTACTTGATTAAAATGCTTTTGGATCTGTGTTTGACTAATGCATGACTGCTTTTTTGTCAG
Seq C2 exon
GAAGCGGCGCTATGTACATCATGACAAACTGGATTGGGACGAGCACAGCTCAGCTGGGAGATATGTGAGGAAACACTGTAAACCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005908:ENSDART00000139890:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.2=100)
A:
NA
C2:
PF0006920=Pkinase=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]