DreINT0049046 @ danRer10
Intron Retention
Gene
ENSDARG00000078322 | col12a1a
Description
collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
Coordinates
chr17:49793959-49807481:-
Coord C1 exon
chr17:49807352-49807481
Coord A exon
chr17:49794096-49807351
Coord C2 exon
chr17:49793959-49794095
Length
13256 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TATTTCCGCTCTCTCCTTAGTGC
3' ss Score
10.42
Exon sequences
Seq C1 exon
ATGTTTGTGGACGGGACGGTGACCACTGTGGTTTTGGAAGGTCTCACTCCGCTGACCGAGTACATAGTAAAGGTTTACTCAGTGGTGGGAGAGGACAGCAGCGACCCACTCAGAGGCATAGAGACCACAT
Seq A exon
GTAAGTGTGCAATTTACCCACAATTCATTCAGCTGCAGAACGGACAGAGCCAGTTCCTCATCAATATGCATCAGCGTTAAGGGTGTAACAGTGCATATCGTGGAGTTCACGATATGGTGTGTACCTCGGGAGCATGAGATGAGACAGAATATTATATTGCCATTGTTTTTCTATGTAAACATGTTTGACGGACATGCATTACTATTATACTTACATTACGTCTTCTGTAGTGTCTCTCATGGCAAAAGTACCAAATTTTTAAGACGCTAATTCAAGATAAAACAATTATAGCTTTAACACGCAATCTATATATATTACGCAATAGATGCCCTTCCAGCCATAACCCAGTATTGGGAAACACCCATACACACTCATTCACACATACACTTATTCGGCCAATTTAGTTTATTCAATTAACCTATACCGCATGTCTTTGGACAGTGGGGAAAACCAGAGCACCCAGAGGAAACCCACGCCAACACAGGGAGAACATGCAAACTCCACACAGAAATGTCAACTGACCCAACCGGGACTCGAACCAGTGACCTTCTTGCTCTGAGGCAACAGTGCTAACCACTGAGCCACCATACTGCCTGACAGCGGCAACATGACAGAACCATTTCTAACTCCAGTGATAAGCACATCTGGACTGACTATTCATAGTCTTAGTGTATAAACCGAACCGTGACCCCCTGTACTGTAATGGTTCAGGAGGAATACATAAACCATAACAACCCTAATCAGCATACACAAACACACAAATAAAGACACTTAAGAAATAATCCGGAACAGAATTATTTACACATGTGCAACATATCACATATTCATGAGGGATTGGTTCTGATGTTGTGTTTTACTATTTTGTCTATTTTGTTGTAAATCGTTGTTGTTTTGCATTGTAGTACTTTAATGTTTTGTTAATAATTGCTGTTGTTTCACATTGCTCTGAATCTTACAAAACATGTCCAGCAAACATTTCACTAAAGAAATATGAAATTTGGCATAAAATTTGTCTAAAATTAACATTATTTATTGACACCAATATATATATATATATATATATATATATATATATATATATATATATATTCACACATACACAGTTAAAGTCAGAATTATTAGCCCCTTCGAATTGTTTTCTTCTGTTTTAAATATTTCCCAAATGATGTTTACCAGAGCAAGAAAATTTTTCACAGTAAAAAAAATTTTTACAGTATGTCTGATAATATTTTTTCTTCTGGAAAAAGTCTTATTTGTTTCTTATTTGTTAGTTTTTAATTTTTTTTAAACACCATTTTAGGGACAAAATTATTAGCACCTTTAATATTTTTTTTCTCGATAACCTACAGAACAAACCATCGTTATACAGTAACTTGCCTAATTACCCTAACCTGTCTAGTTAACCTAATTAACCTAGTTAAGTCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAGAATATCTTGTAAATATTATTTACTGTCATCATGACAAAGATAAAACAAATCAGTTATTAGAAATGAGTAATTAAAACTATTATGATTAGAAATGTGCTGAAAAAATGCTGCTCTTTTAAACAGAAATTGGGAAAAAATAAACAGGGGGTCTAATAATCCAGGCGGGCTAATAATTCTGACTTCAACTGTATATAAATTTTAGATGCTAATGACAATAATTTAAAGTAAACATGCACTTATTTATTTTTTTAGATTTCAATATTTCAGATATGTTTTGTCTGATTCACCTTGTCAAAGGAACTGTTGATTTCACTGATGTTTAACCAGTTACTGAGAAGATGCAAATAAAATGCTTTGCAAGGCGTGTGTGCTTATGTTGCTGATCTTGTTTTTGCCACATTTGATCATGAATTAACATGATGACATAACCCTAACACCATCGTTCCTTTCACAGCGCTCTGAATGGTGTTTCGTCCGGCATGATGCTGCTTTTGCATCGCAAAGTGTCCGTGTTTTTATTCGTGCGCATACATAAAATCATCATTGTCTTTACACTGCAAAATTATTTTCCCAGTATTTTTTGTCTTGTTTTTTAGCATAAACATCAAAACATTCTTAAATCGAGACACATTTACTGAAGAAGCAAATATAAGCAAAAATAAATCACAATTATGTGAGTTGATGATTAAATGTGCAATATGTAGGATTGACCCCCCTTGTGGTTGGCTAGGTATTACAGTCCAAATTCAAAATATTGGAGAGGGTTTTTTTCACCCAACCATTCCTCTGGTGATCGACACACATGCAGGTTGCTATATTGACAGCACCAATAGGAGCAATTGTGCCTACCGAACAAGCTTTACAACGTATGCTACTCAGCTATTGTTTTACTTTAGTAAAATTTGCATTATTTTCTAAATAAAAATTCACTCATGTAGATTTTTATGACTCTGAATCTGCGTCTCATTTCTGAGGCTGCTACGGTCCTCAAAAGTTCACATCATCGATCGCTCCACATTAAAGCAGCCTTCAAGTCTTGGTTTTCCACCAAGGCAAACCAGAGTTCTGAAATATAATTGGGTAAACTGGCAGTGGGCTGGTTATAGAGACCAAAACAAGACAGACATTCTGACACAGAACGCACATTTTTAAAGGCGAATATCTGACTTTAGCATCTTTTTTCAATAAAAAAGTAGGTTCTCTTTGCATGTTTATTAAATATGTAGTAGCATATTATTGTAGTATGCTTTAGAAGAGTCCAAAACATACATACAGCATCTTTAAAACAAGAAAATCAATATTTATGTTTGTTTTAAACTGTGCTGATAGTCTAGTGGTTTGTGCGGGTGTCCTGAGTTTGAGTCCTGGCTCATGGACATTTTCAGATCCAGTTTCTCTCACTTTCTCTAACTTCACTTGCTGTCATCCTAATGTCCTGTTGAATAAAGGTAAACATTCCAAAAATAAATCTTTAAAAAAGCATTTTTCATTGAAAATAAAGTCTAATTTACACGAAATTTAAGTTTCTATTGTTGAACAAAAAAGAAGATGCTTTGATGAAGGTTCGAAAACTGACAGTTTTAGCTATCAAAGTCAATGGCCACCATTTTTTTTTTAAACAATCTCCAAAATATTATCTCTTTTGTTCAACAGAAGAGAGAAATGGTTTGGAAACGCTTCAGTAAATGACGACAGAATTTAAATAATGCTGTAAGTTTACAAGGTTTTATTTTGCTTCTTAAGTAAATACATTTGTACTTAAAGAATAGATATTTCTCAGAAAACAAGACAAAAAATAACAGTATTTTGCAGTGTACACGTTGACATTTGTCTGTCTGTCAGTCATTTCCATCACATGAGTATCCATGATCATCCTCATCCAGTCATTGTCCTTCATGGCACCTCATTCCACCTTCCCATCGCTCCATGAGCTTCAGTCCGCTTAGATGGAGATAGTCAGGGCCTGAGATGAATAATAGAAAGAGAGAAAAGACCTGTTCCCCTCTGTAGTGCCTCTCAGTGCTGTGAGGAGCATGAACATCTACAAAGAGCGCTCCACCACCATGAATGTGAGATGGGACGCAGCCACAGGGGCCACAGGCTACATGCTTCTCTACAAGGCCCTTAACGCCACTGAACCCTCTGTGGAGCAGGAGGTACGAGGACGACATACACTTTAACCACTGCCTCGCTCCGGTCTTCAACAACAGCTTGTGTATTAGAACTCAAACTAGGGCAGTGTAGAGTCTGAGAGAATCTGAAGTTGGTCCTCCATTTTTAATGTTTAGCAGTAGAAAGAGAGAATGTGCTTAGAGATTTTGTTTGATAGTGACTTCATTTGGAGAAGACAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAATCTAGTGATTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTCGGAGAAGATAGTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTCGGAGAAGATAGTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTTATTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCGTTTGGAGAAGATATTGACTTCGTTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCGTTTGGAGAAGATATTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAATCTAGTGATTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCGTTTGGAGAAGATATTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAATCTAGTGATTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTCGGAGAAGATAGTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTTATTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCGTTTGGAGAAGATATTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCGTTTGGAGAAGATATTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAATCTAGTGATTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCGTTTGGAGAAGATATTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATATTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATATTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGCTAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGCCTTCATTTGGAGAAGATAGTGACTTCATTTGGAGAAGATAGTGACTTCATTATGGATTTTGTCTTGATTTCCAGTACTAATATCTGCAGAAGCCAGTTTCCACCTCATTTTATTATTATTATTTATTTATTTTTTAAAGATAGTTATGCTTGGTTCTTTCCAAATTTGAACTTAAAGTCTTTGTGAATTTAAAAATTGCAATGTATACAGGCACATTGTTATTCTTTAGGTGAAAAAATAATCCGTCCAGGTTAATCCACTTAAAAAAAAAGCTGTTTTGGTAATCTTTAATCAAAGTCTGAGCATTTGTTTCCAAGTTTGTAAAGGCGGTTCCTCACTGTTGTCGTATATTTGACGACTTCAGTTACAATATTCTTAACACTTCTCTCTTACCGCTACTTTGCTATGAGGTAATGATTCGCTAAAGGAAAGCCCTGCCCCCTTATCAATTTTCAGTTTCAGTTGGAATACATCAACATACTGAAAATAAGTCTCAGCAACTTCCAGTTCATGATGACTTTAAGTATTCGTAATTAATTTACATACAAAGGCAAATCAATTGTGCAAATAGATTTTAATTTCTGCTAGGCCACATGAATGACTTGGAATTTCATGTTTGCCATGAACTTGAATAAAGTAGTAGTAGTAGTAGTAGAAAACTATTAATTCACCACCTTTGCCACCATTTACATCACAAATACAGTAAATTATTAAACAACAAACGCCACAAAAGCAGTACAACAAATTACAAAGTCAACTTTTCGAGCAGAAAATTAGCATGAGCTGATAAGCGTGATAGTGGTGATATTTCTTGCAATTGTGAGTTTTTAGTTTTTACACACTTAATTTTTTTAAGAATTGTGAGATGAAGGGTTCTATTTTAACAATCTAAGCGCAAAGTCTGAAGCGCATAGTGCAAAAGCATTAGGGTCGTGTCCGAATCCACTTCTGCTCGTTTAAGGCCGGAAAAATACAGTTTGCACCGCAACGCATGGTTGTGCTTATTCTCTTAATGAGTTATGGGTGAGTTTTGAGCATAACGTGCATTAAACCAATCAGAGACACTGTACGCAAAAAACTGAACGCTTCACTAGTGAGACAACAGTTAAACAGTGCCTCTGCAGCATGAGGATAAAGAATGAGCCTCCTCCATTCAGCCTCTTTACTTTCTCTTTACTTTACTTTACTTTTACTCTTCACTCCTTTACTTTCATGGATGAGGAAATGGTGAAAACTCACTCCACTGAAGACATCCATTAGCCTACATACTTAATTTGGTTCGTGAAGCGCAAAGATTTGTTTCAAAACTATTTCTAAATTCAGATAAATTTTCCAGCATAGAATAAATGAACAATAATAAAGAAGTGTTGTCAAAGCACTAAGTTATATCCAAACACACGTCCTTGTTCTTATGCCCCATATCGTGATGCAAACGTCCTCGAAACCCCACAGGTGGACAAATCCAAGCTTGTTTTTATAAATTCTATTTAAACATAAATATGCATATAATAAATAATACTGCTAATTATAATATCAATATACAAATGCAGATTGTCATGAATAAACTGAAAAGGCAGCACATCAATGAGTTCACAAAGTGGCGCAAATAGATTTGCTATTTAAACAATGTGGTGCAAAACATGAAAATTACAGTTGCGCTGGTCTAAAAATAGCAAAAAATTGCACTATACACGTCTTGCTGTTTATTGAGGGAGGTATATGATAGGGCCTGGAAACACAATTCCTATTTTATAGCTTGAAATGTGAGAAAAATGCTCATAATTGGACAATAAAATCGTAATAAAATGTAACAATAAAAAAGGTTGCTCAAACATGAATGTCTATATATTTTTAGAGCAAGATACAGTTAGAAGTAAATGACGTAAGTGACATAATGATTTTTTTTTATTACTTTTTGCTTAAAGCAAGACAAAAAATATCTCCTTAAGAGATCTAAAAATTTATTTTTTTCTGTGATAAACATAAACTTTAATAAGTTCTGAAGTTATTTTGTTTCTCAACTAAACGTATCTTAATTTACGCATTTATTTGTACTGGAAAACAAGCAAAAGTTTCGAAGTCAGAGCAACATTTTTGCATTGCAGAATATTCAATAAAATAAATAGTGTAAATGACAAAATATTGGCCTTTAAAGCAAGAGACAAAATGTTCTCATTGAAACCCAGCGGTCTTGTGGAGCTCAAATCTGTAAGCGACTATGACATACTGTAGCAGAAAGAGGAAATGGAAAGCGTTTTTGGAGATGCAGTAGAGACCGCAGGTGGTGGGTTTACATCGAATGGCTTCAGAAACGTCCTTTATATTGCAGCTTTTGGAAAATAACAGCTCATTAGCGCTTTGGGGCTTGTTAGCTCAGTTTTTCTTTCACATAAGTGGGAAGATCCAGAGCTCTCGCCGTCAGTCCTGGTGAGAATCCGATGTCCACAGGGCCCGTCTGAGAGCGCAGATGTTTAAAATGGCTCCTCCATTATTTCCATTAGGAAGAAAGCATATGTGAGAAAATATCTTAGTCTAGACTGAAATCAGAAGTTGTATAAAGGATTCAGAAATATTTATGCTAAAGCTGCCCTGCTGAAAAGACCAGCACATTTTGTGTTTTGAGGCTCAACATTTCGAGCTTCTTTGCTATAAATGTACCTTATAATGTAAAACCGAAATGATTTAGATCCGTGGTTCTCAAACTGTGATACGTGTAACACTAGTGGTACGGATGCTTCCTTCTAGTGGTACGCAGTGAAATCGCTGAATAATTAAAGTAAAAAAACAAACGCACTTTTAACCATTTGACGCATACGATAACACCAATGTGATCAGTAAATTAATTTAATAGGCTGAACCTTTTATTTTAATAAAAAAAAAATGTTATGTATTCTATCATTTGAAGCTAATCTCCCCATATTCGTAACTGTTGTTGGTGGCGTATCCTGTAATTTTTTATCGCAATGTTAAAAGGTATAGTTTAATCACTTGCTTTTCTAACACAAATAGCCAACTCTAACGCGCAGGAAGCAGATCTAATTTAAATATGTAAATCCAGTTTATATATCTATAATTCAAGGTAATTTTTAGATTTCGAAGATATACAAATATGTCAAACATGGAGAGGAAAAATGAAAAAATCAAACATGGAGAGTCTCAAAAATCCTTTTGTATGAGGAACTACTTTCTTTCGCGTTGGATTCAAATCATAAGCTGACAGTTAAACAGCTGAGCAAGCATCTTTTAAACTTTACATCTGTAGTGTCTGGTTGGCTGTATGTGGGCGGAGTAATACACAAAGGGTAAAGAGGCTGAACGGGTGCTGATATTACTTAAATATATCACGGCGATCAGCCAATCAGATTCGAGAACCAGACAGAACTGTTGTATAAATAAATAAGTAAATAAAAAAAATAATAATAATAAATATATATATATATATATATATATCATATATTTCTAAATGTATCAAAAAAGATTTTAAATATGAGTATGATGGCGTATTACTTATTTATTATTTATAAAACTATTTATGAGGTCCAAGGAATATTTCCAGGTTTAGATGAATAGGCTACTATATGATAATACTTTACATTTAAATACAGCAGTTTTCTTTTACTTTTTAAGAACAGTGTCATTTTTAATTACTTTATAAAAAGCACATTTTATTTTAAACGTTGACGTTTTATTTATTTTTTTACCTGTAAGCAGAGTGCAGTTTTAAAGTTCAAACTATTTATAGTTTAAAGTGTCTCACATTAATAAATATTCATAATAATAGTAATTAATCTGCCACATTTTTTTAACTGTGCAGAGCTGTCGCTGCTTAAGTAGGCCTACTACGCTACTGTATTTCAATACTAGTCATTATGGTGGTACTTGGAGAGAAAAAAATTTCTGAGGTGGTACTTGGTGAAAAAGATCCACTGACTTAGAGTATTATTTTTATAGTATTACTAGTTTTTTTATATTTAAAATTTTAAAGTGTATTTTTTGTTTGTTTCAAAGTTTGCAATGTCTGCAATTATATAAAATATATTCAATTATATTAATTAGATCTCTAAAGTCTCTGAAATGTGACCAATTACAAATGAAAACATATAAACATATAAGCTTACATATAAGCTTTATTTGGGTTCATAAACGATACGAAACATATACAGTGAGTACAAATGCCTCTCATCTTTATTCTTCACCAGCACATGTAAGGTTATTGTAACATTCAATTCAGTTCAATTCAGCTTTATTTGTATAGCGCTAGTACAATGTACATTGTGTCAAAGCAGCTTCACATAAATGGTCATAGTAACTGGATCATTGTGGTTCAGTTTTTAGTGTTTAAGTTCAGTTCAGTTTAGCTCAGTTCAGTGTGGTTTGAAATCATGTTTCAAACATCTTGTTAGAAAAGTAATTCCGTCATTCTGAGTTCATAATAGTCCCAAAGGTGATGATAATAATATGAATGATGATAATTATATGTATTTATTATTACAGTGTAATGTCTCGGCTGTGTGTTTAAAAATGGCGGTTCTTTTGTTTTTATTCTCCAGGCTTGTGCAAGCGCTAAAGACATTTCTCTGCAAACCAATAGCGTTCAGCTGCGCATCTAGCTCCGCCTTTTGGTGCCCTTTTGTTGTGCTAGGTACCCTTTGGAAAGGGTAGCCAAAATAAGTGGTGCGGTTCGCTTTTTGCTATATTTTGACAGTGGAAATGGATTTAAAAAGCATACAACCAGTACCAGTCAATGGAAACGGGCCATTAGATATTGATAATTGTTTAAGGTTTTGTTAAAGTAAACATTAAATGCATTGGGCTATTACAATGATTGTTAAAGAATGAAGGAGCTGTAGAGAAATTCCTATCTAAAACATTGTAACATTGTCTTTCAAAATTCCTGTGAGTCCATCCTTGGGATGCTTTTGCTTATAGAAGCTGTTTGTGTGTAAACTGATCATTCGACGGAGAATTAAAGCTATTAAAAGACAAACTTTAGCCCCTTTCACGCATACAGAACTTTCCGGAAAATTGCCGGCAATACTGTTCACACATACAACAAAGGTTGTATGTGTGAACAGGTCCTTTTTGAAAATACCCGTAAATTCGTTTTGGCTATTTTCAGACAGTCAGACGCATTTACGTCTGCGCGGTTTGTGAGAATAAAAGTCTTTGAATATTTTTCCAGACACATTTAGCTGTTAGAAGTTAGTCAGATCACGTTTATATGTTCTTCTTAATGCCACCTGTGTAAATAATCATCGATGAGATGCTTATGATAAGCCGTTGTTTGTTTACCTTTAAGCTTTGCGTGTGTCTGTGAAACAGCATGTGAGCGCCAGCACACGCACATATTATGAACATCTCGACATGCGAAAGTGATCCTGCGAAAGTTGTTCACAATATTGATCATCCACAGAGTTTGTAATTTAGTCAAATGTTTACAAATACAAGCGCAGCCGTTTAAAGCTCATTTGTGGTGAATGATGTCAGAATTTACCGGTATTTTGGAAAGGATGTGTGAATGCTCTTTTCCGGAAAAATTCCGTAACGTCCTCGCCTGTGTGAACAGCGCTTTTTTGAATATACCGGTAAAGTCGTTCCGGAAATTTTCCAGATATTTACGGTATCACTGTGTGAGAGGGGATTTTGTCTGACTTTATTCAGTTTTAGCGAACAGGAAGAAATTAATTTGCCATTACAAGCCTCAACGCATCGACATCTGTTTTATAAAATCGTGCTGGTCCAAATCAGATCTGGTCTTTCCAGCAGGGCAGCAAAGTGATTTGTTCCATCAAATATGCTTTTTCACGAGTGCAGCCTTCCTTTCATGTGTGGTGTGGTTGACCTTCACAGATGCGAGTGAAAGGAATGGTCACTGACGTCCAGCTGAAGAAACTTCTCCCCAACACGGCCTACAGTGTTTCGCTCTTCGCCCTGCACGGCGATTACGCCAGTGAACCTCTGATTGATCAAGGGGTGACCCGTAGGTGGCAGTAGGGTTTTCTTCCCCTCAGCAGGGTGTTCTGCTCGCCTGTCAGACTCTCATTGTTTCTGTTTTTTGTTTTGTTTTTTCTTCTGTATTTCCGCTCTCTCCTTAG
Seq C2 exon
TGCCTCTTCCTCCATCCGGTGAGTTGAGGATTACCGATGTGACCCACAGCACCATGCAGCTGGACTGGGACGCTGCGCCCGGCGCCGTCCGAAAGTACATCATCACTTACAAGCCAGAGGAGGGAGAGGCGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078322:ENSDART00000154728:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.283
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.2=79.5)
A:
NA
C2:
PF0004116=fn3=PU(53.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]